RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 FUBP1Q96AE4 644 aaKnown RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 OR6C1Q96RD1 312 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 RUFY1Q96T51 708 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 DPYSL5Q9BPU6 564 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 C7orf25Q9BPX7 421 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 NUDT9Q9BW91 350 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 LGR4Q9BXB1 951 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 GSDMCQ9BYG8 508 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 CEP44Q9C0F1 390 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 POPDC2Q9HBU9 364 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 PADI1Q9ULC6 663 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 SMC3Q9UQE7 1217 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 PLEKHM1Q9Y4G2 1056 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 PCDHGA9Q9Y5G4 932 aaKnown RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 DGKBQ9Y6T7 804 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 MDC1Q14676 2089 aaKnown RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 FBN3Q75N90 2809 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 NAV3Q8IVL0 2385 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 PRSS38A1L453 326 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 GOLGA6CA6NDK9 693 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 GOLGA6BA6NDN3 693 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 RNF225M0QZC1 329 aaPredicted RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 PDXKO00764 312 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 AREL1O15033 823 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 SART1O43290 800 aaKnown RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 THAP12O43422 761 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 BUB1BO60566 1050 aaPredicted RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 NDUFA10O95299 355 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 AVPP01185 164 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 PLEKP08567 350 aaPredicted RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 GOLGA6DP0CG33 693 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 BPIP17213 487 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 NFKB1P19838 968 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 BMP6P22004 513 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 KELP23276 732 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 NR2F2P24468 414 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 ITGA3P26006 1051 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 HTR1EP28566 365 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 PSMC2P35998 433 aaKnown RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 ACTR1BP42025 376 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 POLD2P49005 469 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 LIG3P49916 1009 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 MXI1P50539 228 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 HDAC4P56524 1084 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 ACTR1AP61163 376 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 SNRPD1P62314 119 aaKnown RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 RPS15P62841 145 aaKnown RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 ARF5P84085 180 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 CTBSQ01459 385 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 RAD51Q06609 339 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 SLC20A2Q08357 652 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 ELP6Q0PNE2 266 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 NFATC2Q13469 925 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 MTM1Q13496 603 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 CUL2Q13617 745 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 SMTNL2Q2TAL5 461 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 TMEM52BQ4KMG9 183 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 DENND2CQ68D51 928 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 DOK6Q6PKX4 331 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 INTS8Q75QN2 995 aaKnown RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 ARHGAP22Q7Z5H3 698 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 SETD3Q86TU7 594 aaPredicted RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 NAGSQ8N159 534 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 NXPE1Q8N323 547 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 IQUBQ8NA54 791 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 OR2AP1Q8NGE2 309 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 THAP4Q8WY91 577 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 HMCESQ96FZ2 354 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 HSFY1Q96LI6 401 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 NSUN5Q96P11 429 aaKnown RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 NCAPGQ9BPX3 1015 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 TRIM56Q9BRZ2 755 aaKnown RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 TRIM62Q9BVG3 475 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 TKTL2Q9H0I9 626 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 KCTD10Q9H3F6 313 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 PIF1Q9H611 641 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 WDCPQ9H6R7 721 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 AKIRIN1Q9H9L7 192 aaPredicted RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 MLXIPLQ9NP71 852 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 AGPAT4Q9NRZ5 378 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 EXOC1Q9NV70 894 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 ARHGEF38Q9NXL2 777 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 GOLGA6AQ9NYA3 693 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 GPN3Q9UHW5 284 aaPredicted RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 KIAA1257Q9ULG3 409 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 MAPK8IP1Q9UQF2 711 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 EFR3BQ9Y2G0 817 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 NTNG1Q9Y2I2 539 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 NEU2Q9Y3R4 380 aa4.76□□□□□ -1.65
LIMS1-214ENST00000542845 DIDO1Q9BTC0 2240 aaKnown RBP4.76□□□□□ -1.65
LIMS1-214ENST00000542845 PVALEFA0A1B0GWK0 134 aa4.75□□□□□ -1.65
LIMS1-214ENST00000542845 E5RJQ4 531 aa4.75□□□□□ -1.65
LIMS1-214ENST00000542845 INSIG1O15503 277 aa4.75□□□□□ -1.65
LIMS1-214ENST00000542845 POLR2DO15514 142 aaKnown RBP4.75□□□□□ -1.65
LIMS1-214ENST00000542845 SPAG6O75602 509 aa4.75□□□□□ -1.65
LIMS1-214ENST00000542845 ZMPSTE24O75844 475 aa4.75□□□□□ -1.65
LIMS1-214ENST00000542845 RASSF9O75901 435 aa4.75□□□□□ -1.65
LIMS1-214ENST00000542845 MAP3K6O95382 1288 aa4.75□□□□□ -1.65
LIMS1-214ENST00000542845 PIGNO95427 931 aa4.75□□□□□ -1.65
LIMS1-214ENST00000542845 IGLV3-25P01717 112 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms