RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ZDHHC24Q6UX98 284 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 SYT12Q8IV01 421 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 IFT20Q8IY31 132 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 MPP5Q8N3R9 675 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 OR13C4Q8NGS5 318 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 FAM174AQ8TBP5 190 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 FBXO25Q8TCJ0 367 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 MYOCQ99972 504 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 RIOK2Q9BVS4 552 aaKnown RBP17.06■□□□□ 0.32
LIG1-204ENST00000542460 MRM3Q9HC36 420 aaKnown RBP17.06■□□□□ 0.32
LIG1-204ENST00000542460 SUSD2Q9UGT4 822 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 SOX13Q9UN79 622 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 SMG5Q9UPR3 1016 aaKnown RBP17.06■□□□□ 0.32
LIG1-204ENST00000542460 ABCA7Q8IZY2 2146 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 PRR5-ARHGAP8B1AHC4 643 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 BCAT2O15382 392 aaPredicted RBP17.06■□□□□ 0.32
LIG1-204ENST00000542460 GFRA3O60609 400 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 PYGLP06737 847 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 PSMA3P25788 255 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 HOXD12P35452 270 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 SPAM1P38567 509 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 DHX9Q08211 1270 aaKnown RBP17.06■□□□□ 0.32
LIG1-204ENST00000542460 CBLBQ13191 982 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 BBS9Q3SYG4 887 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 HENMT1Q5T8I9 393 aaKnown RBP17.06■□□□□ 0.32
LIG1-204ENST00000542460 PEAR1Q5VY43 1037 aaPredicted RBP17.06■□□□□ 0.32
LIG1-204ENST00000542460 LAIR1Q6GTX8 287 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 PNCKQ6P2M8 343 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 SUMF1Q8NBK3 374 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 DTX3LQ8TDB6 740 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 IFT81Q8WYA0 676 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 PIGKQ92643 395 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 LRRC39Q96DD0 335 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 DNAJC1Q96KC8 554 aaKnown RBP17.06■□□□□ 0.32
LIG1-204ENST00000542460 PWWP2AQ96N64 755 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 SLC6A18Q96N87 628 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 FOXP3Q9BZS1 431 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 TM9SF3Q9HD45 589 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 IL26Q9NPH9 171 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 GDF3Q9NR23 364 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 AASDHPPTQ9NRN7 309 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 TMEM74BQ9NUR3 256 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 APPL1Q9UKG1 709 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 SLCO1B1Q9Y6L6 691 aa17.06■□□□□ 0.32
LIG1-204ENST00000542460 GLYATL1P3A0A0U1RQE8 302 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 EPN2O95208 641 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 PCCBP05166 539 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 TSHRP16473 764 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 CD38P28907 300 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 IGFALSP35858 605 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 AFF3P51826 1226 aaKnown RBP17.05■□□□□ 0.32
LIG1-204ENST00000542460 CLDN2P57739 230 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 TMPRSS15P98073 1019 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 CUL1Q13616 776 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 INPP5AQ14642 412 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 MSS51Q4VC12 460 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 ALS2CLQ60I27 953 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 RAET1GQ6H3X3 334 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 GCNT7Q6ZNI0 430 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 CENPUQ71F23 418 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 TRAM1L1Q8N609 369 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 PLA2G15Q8NCC3 412 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 BMFQ96LC9 184 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 ZNF778Q96MU6 729 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 NAT9Q9BTE0 207 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 ZSCAN5AQ9BUG6 496 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 RRAGDQ9NQL2 400 aaPredicted RBP17.05■□□□□ 0.32
LIG1-204ENST00000542460 ZDHHC18Q9NUE0 388 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 CA5BQ9Y2D0 317 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 PCDHGA5Q9Y5G8 931 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 MAD1L1Q9Y6D9 718 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 TRPM6Q9BX84 2022 aa17.05■□□□□ 0.32
LIG1-204ENST00000542460 ATXN2Q99700 1313 aaKnown RBP17.04■□□□□ 0.32
LIG1-204ENST00000542460 A0A1B0GTW7 788 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 FAM237BA0A1B0GVD1 139 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 CCDC78A2IDD5 438 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 POM121BA6NF01 834 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 A6NNZ2 444 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 E7ESA3 106 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 H7C0S8 307 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 K7ESM1 405 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 TOR1BO14657 336 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 EIF3HO15372 352 aaKnown RBP eCLIP17.04■□□□□ 0.32
LIG1-204ENST00000542460 TEAD1P28347 426 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 TRIM23P36406 574 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 GPR1P46091 355 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 ACVR1Q04771 509 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 OVGP1Q12889 678 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 PDPK2PQ6A1A2 396 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 RABEPKQ7Z6M1 372 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 ABI3BPQ7Z7G0 1075 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 IQCHQ86VS3 1027 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 CCNJLQ8IV13 435 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 AGGF1Q8N302 714 aaeCLIP17.04■□□□□ 0.32
LIG1-204ENST00000542460 MFSD2AQ8NA29 543 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 OR13J1Q8NGT2 312 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 STAMBPL1Q96FJ0 436 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 CDKN2AIPNLQ96HQ2 116 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 AGAP2Q99490 1192 aa17.04■□□□□ 0.32
LIG1-204ENST00000542460 EBNA1BP2Q99848 306 aaKnown RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms