RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 MAGEA13PA6NCF6 341 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 UBDO15205 165 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 SOAT2O75908 522 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 ME2P23368 584 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 PMLP29590 882 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 GATMP50440 423 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 NUDT2P50583 147 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 PTPN5P54829 565 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 TIAL1Q01085 375 aaKnown RBP eCLIP9.84□□□□□ -0.83
SS18-205ENST00000542420 ART3Q13508 389 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 ZNF423Q2M1K9 1284 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 MPP7Q5T2T1 576 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 PRMT9Q6P2P2 845 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 PRSS55Q6UWB4 352 aaPredicted RBP9.84□□□□□ -0.83
SS18-205ENST00000542420 TMEM207Q6UWW9 146 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 CERS6Q6ZMG9 384 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 GLT6D1Q7Z4J2 308 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 CIR1Q86X95 450 aaPredicted RBP9.84□□□□□ -0.83
SS18-205ENST00000542420 GOLM1Q8NBJ4 401 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 OR7D4Q8NG98 312 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 ANKRD49Q8WVL7 239 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 ROPN1LQ96C74 230 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 MYEOVQ96EZ4 313 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 ECSITQ9BQ95 431 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 CLSTN3Q9BQT9 956 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 GPBP1L1Q9HC44 474 aaPredicted RBP9.84□□□□□ -0.83
SS18-205ENST00000542420 POLR3BQ9NW08 1133 aaPredicted RBP9.84□□□□□ -0.83
SS18-205ENST00000542420 PCDHB1Q9Y5F3 818 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 UTRNP46939 3433 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.84□□□□□ -0.83
SS18-205ENST00000542420 TRIM38O00635 465 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 FZD6O60353 706 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 ZMPSTE24O75844 475 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 BCAS2O75934 225 aaPredicted RBP9.84□□□□□ -0.83
SS18-205ENST00000542420 PRLP01236 227 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 LAG3P18627 525 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 RPS3P23396 243 aaKnown RBP eCLIP9.84□□□□□ -0.83
SS18-205ENST00000542420 IKBKEQ14164 716 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 GPR158Q5T848 1215 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 LYPLAL1Q5VWZ2 237 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 KANK2Q63ZY3 851 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 NXNQ6DKJ4 435 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 CXorf57Q6NSI4 855 aaKnown RBP9.84□□□□□ -0.83
SS18-205ENST00000542420 KIAA1841Q6NSI8 718 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 METTL2BQ6P1Q9 378 aaKnown RBP9.84□□□□□ -0.83
SS18-205ENST00000542420 LARP4Q71RC2 724 aaKnown RBP eCLIP9.84□□□□□ -0.83
SS18-205ENST00000542420 TAS1R1Q7RTX1 841 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 KDELC2Q7Z4H8 507 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 CMTR2Q8IYT2 770 aaKnown RBP9.84□□□□□ -0.83
SS18-205ENST00000542420 SLC39A11Q8N1S5 342 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 CPXM2Q8N436 756 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 DCAF4L2Q8NA75 395 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.84□□□□□ -0.83
SS18-205ENST00000542420 B3GALT6Q96L58 329 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 ZNF558Q96NG5 402 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 CATSPER2Q96P56 530 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 UNC93B1Q9H1C4 597 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 HIPK3Q9H422 1215 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 WDR41Q9HAD4 459 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 ARL5AQ9Y689 179 aa9.84□□□□□ -0.83
SS18-205ENST00000542420 A0A0D9SEW6 157 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 LOC100653049A0A140TA62 436 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 ANKRD66B4E2M5 251 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 H0YJX3 145 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 NEMP1O14524 444 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 VPS26AO75436 327 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 NDUFS3O75489 264 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 TRPA1O75762 1119 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 KRT34O76011 436 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 GJB5O95377 273 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 MATN4O95460 622 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 ESR1P03372 595 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 RPS17P08708 135 aaKnown RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 F7P08709 466 aaPredicted RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 PTGER3P43115 390 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 EPHB1P54762 984 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 STX1BP61266 288 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 FOXM1Q08050 763 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 MYBPC3Q14896 1274 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 TCTN1Q2MV58 587 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 OGFOD2Q6N063 350 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 C8orf82Q6P1X6 216 aaPredicted RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 DNAJC14Q6Y2X3 702 aaPredicted RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 Q6ZNB5 142 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 RNF165Q6ZSG1 346 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 TMEM173Q86WV6 379 aaPredicted RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 PDSS2Q86YH6 399 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 DENND1CQ8IV53 801 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 TTC30BQ8N4P2 665 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 OR13C4Q8NGS5 318 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 DTX3LQ8TDB6 740 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 KCNJ9Q92806 393 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 ZNF689Q96CS4 500 aaPredicted RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 RCN3Q96D15 328 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 KLHL4Q9C0H6 718 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 ALG9Q9H6U8 611 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 MAGEE1Q9HCI5 957 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 EPS15L1Q9UBC2 864 aa9.83□□□□□ -0.84
SS18-205ENST00000542420 CNOT11Q9UKZ1 510 aaKnown RBP9.83□□□□□ -0.84
SS18-205ENST00000542420 RAI2Q9Y5P3 530 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms