RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 FAR2Q96K12 515 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 HAUS8Q9BT25 410 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 LIN28AQ9H9Z2 209 aaKnown RBP12.51□□□□□ -0.41
RNF4-222ENST00000541204 OLAHQ9NV23 265 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 TMEM181Q9P2C4 612 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 CROTQ9UKG9 612 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 MTF2Q9Y483 593 aaPredicted RBP12.51□□□□□ -0.41
RNF4-222ENST00000541204 HEMK1Q9Y5R4 338 aaPredicted RBP12.51□□□□□ -0.41
RNF4-222ENST00000541204 TET1Q8NFU7 2136 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 FNDC1Q4ZHG4 1894 aaPredicted RBP12.51□□□□□ -0.41
RNF4-222ENST00000541204 NYNRINQ9P2P1 1898 aaKnown RBP12.51□□□□□ -0.41
RNF4-222ENST00000541204 A0A0D9SEW6 157 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 H0YJX3 145 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 SRP72O76094 671 aaKnown RBP12.51□□□□□ -0.41
RNF4-222ENST00000541204 LTA4HP09960 611 aaKnown RBP12.51□□□□□ -0.41
RNF4-222ENST00000541204 ZNF23P17027 643 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 SLC7A2P52569 658 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 ADRM1Q16186 407 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 IL31Q6EBC2 164 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 NADSYN1Q6IA69 706 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 KDELC1Q6UW63 502 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 CYHR1Q6ZMK1 362 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 LGI2Q8N0V4 545 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 LRCH3Q96II8 777 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 SLC25A51Q9H1U9 297 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 IRAK4Q9NWZ3 460 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 RSL24D1Q9UHA3 163 aaKnown RBP12.51□□□□□ -0.41
RNF4-222ENST00000541204 TRAF6Q9Y4K3 522 aa12.51□□□□□ -0.41
RNF4-222ENST00000541204 H3BNH8 94 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 SOCS2O14508 198 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 HTRA2O43464 458 aaPredicted RBP12.5□□□□□ -0.41
RNF4-222ENST00000541204 SLC4A1P02730 911 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 HTR7P34969 479 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 GRIA3P42263 894 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 SERPINH1P50454 418 aaKnown RBP12.5□□□□□ -0.41
RNF4-222ENST00000541204 CDH15P55291 814 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 NME5P56597 212 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 MRPL58Q14197 206 aaKnown RBP12.5□□□□□ -0.41
RNF4-222ENST00000541204 TRIP4Q15650 581 aaPredicted RBP12.5□□□□□ -0.41
RNF4-222ENST00000541204 KLC3Q6P597 504 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 ZBTB49Q6ZSB9 765 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 PTCD2Q8WV60 388 aaKnown RBP12.5□□□□□ -0.41
RNF4-222ENST00000541204 CANT1Q8WVQ1 401 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 PBXIP1Q96AQ6 731 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 CCDC126Q96EE4 140 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 IMP4Q96G21 291 aaKnown RBP12.5□□□□□ -0.41
RNF4-222ENST00000541204 SLC25A23Q9BV35 468 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 GSTO2Q9H4Y5 243 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 IL1RL2Q9HB29 575 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 MRM3Q9HC36 420 aaKnown RBP12.5□□□□□ -0.41
RNF4-222ENST00000541204 TMEM248Q9NWD8 314 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 THEGQ9P2T0 379 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 MYRFQ9Y2G1 1151 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 OR6C75A6NL08 312 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 MUSKO15146 869 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 AKAP10O43572 662 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 SUPT7LO94864 414 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 GALTP07902 379 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 MMP2P08253 660 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 ATF6P18850 670 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 MAGEA11P43364 429 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 KCNC1P48547 511 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 NDST2P52849 883 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 GPR17Q13304 367 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 GALNT3Q14435 633 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 SAMD4BQ5PRF9 694 aaKnown RBP12.5□□□□□ -0.41
RNF4-222ENST00000541204 TMCO2Q7Z6W1 182 aaPredicted RBP12.5□□□□□ -0.41
RNF4-222ENST00000541204 DHFR2Q86XF0 187 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 SH3RF2Q8TEC5 729 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 RMND5BQ96G75 393 aaPredicted RBP12.5□□□□□ -0.41
RNF4-222ENST00000541204 EXOC2Q96KP1 924 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 C3orf30Q96M34 536 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 RANBP9Q96S59 729 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 SEMA3CQ99985 751 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 SPON2Q9BUD6 331 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 ALG9Q9H6U8 611 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 TIMMDC1Q9NPL8 285 aa12.5□□□□□ -0.41
RNF4-222ENST00000541204 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.5□□□□□ -0.41
RNF4-222ENST00000541204 ARSDP51689 593 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 PRAMEP78395 509 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 FAM45BPQ6NSW5 357 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 TMEM207Q6UWW9 146 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 FUNDC1Q8IVP5 155 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 CCDC117Q8IWD4 279 aaPredicted RBP12.49□□□□□ -0.41
RNF4-222ENST00000541204 SLC43A3Q8NBI5 491 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 FAM45AQ8TCE6 357 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 BLOC1S5Q8TDH9 187 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 DIS3LQ8TF46 1054 aaKnown RBP12.49□□□□□ -0.41
RNF4-222ENST00000541204 GAB3Q8WWW8 586 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 DUS2Q9NX74 493 aaKnown RBP12.49□□□□□ -0.41
RNF4-222ENST00000541204 VWA8A3KMH1 1905 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 GJB5O95377 273 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 RBP1P09455 135 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 ALDOCP09972 364 aaKnown RBP12.49□□□□□ -0.41
RNF4-222ENST00000541204 IRF1P10914 325 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 ATP6V1B2P21281 511 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 OR1D2P34982 312 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 PRKCQQ04759 706 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 ACAP2Q15057 778 aa12.49□□□□□ -0.41
RNF4-222ENST00000541204 SIRPB2Q5JXA9 342 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms