RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 DNPEPQ9ULA0 475 aa9.46□□□□□ -0.9
CLIP1-214ENST00000540539 PCDHB8Q9UN66 801 aa9.46□□□□□ -0.9
CLIP1-214ENST00000540539 ACOT9Q9Y305 439 aa9.46□□□□□ -0.9
CLIP1-214ENST00000540539 MFHAS1Q9Y4C4 1052 aa9.46□□□□□ -0.9
CLIP1-214ENST00000540539 PCDHB13Q9Y5F0 798 aa9.46□□□□□ -0.9
CLIP1-214ENST00000540539 HSPE1-MOB4S4R3N1 261 aa9.46□□□□□ -0.9
CLIP1-214ENST00000540539 CNTNAP1P78357 1384 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 TCRBV9S1A1TA0A576 114 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 SH3D21A4FU49 640 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 E2F3O00716 465 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 INMTO95050 263 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 CCNE2O96020 404 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 GSRP00390 522 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 HTR1AP08908 422 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 TRAPPC2P0DI81 140 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 TRAPPC2BP0DI82 140 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 FGF3P11487 239 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ERP29P30040 261 aaKnown RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 GRK3P35626 688 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 GGT5P36269 586 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 CCR10P46092 362 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 AKR1D1P51857 326 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 GP2P55259 537 aaKnown RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 BNC1Q01954 994 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 DSC1Q08554 894 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 BAMBIQ13145 260 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 PLD1Q13393 1074 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 C21orf62-AS1Q17RA5 79 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 PRR16Q569H4 304 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 TXNDC11Q6PKC3 985 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ZNF517Q6ZMY9 492 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 KCTD1Q719H9 257 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 SAMD7Q7Z3H4 446 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ZSWIM9Q86XI8 627 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 KIF18BQ86Y91 864 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 RASGRP3Q8IV61 690 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ZNF366Q8N895 744 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ATAD1Q8NBU5 361 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 YIPF5Q969M3 257 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 RADILQ96JH8 1075 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ZNF668Q96K58 619 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 C9orf16Q9BUW7 83 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ZNF416Q9BWM5 594 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 APOL5Q9BWW9 433 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 FAM96AQ9H5X1 160 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 TMEM39AQ9NV64 488 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 NAV1Q8NEY1 1877 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 TP53BP1Q12888 1972 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 RNF103-CHMP3A0A140T963 221 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 FAM149AA5PLN7 773 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 AGAP5A6NIR3 686 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 HACD1B0YJ81 288 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 WNT10BO00744 389 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 LIASO43766 372 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 RFPL1O75677 317 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 DDAH1O94760 285 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ECDO95905 644 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 GAP43P17677 238 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 TNNI3P19429 210 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 MSH3P20585 1137 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 F8A1P23610 371 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 HOXA1P49639 335 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 NUMBP49757 651 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 RPL10AP62906 217 aaKnown RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 FSTL1Q12841 308 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 MFSD10Q14728 455 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ACOX1Q15067 660 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 BTBD16Q32M84 506 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ANKRD39Q53RE8 183 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 RAP1GAP2Q684P5 730 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 TBC1D20Q96BZ9 403 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 DUS3LQ96G46 650 aaKnown RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ZBED3Q96IU2 234 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 NAP1L4Q99733 375 aaKnown RBP9.45□□□□□ -0.9
CLIP1-214ENST00000540539 NECTIN3Q9NQS3 549 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 ADA2Q9NZK5 511 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 TRPM5Q9NZQ8 1165 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 SLC23A1Q9UHI7 598 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 SNX6Q9UNH7 406 aa9.45□□□□□ -0.9
CLIP1-214ENST00000540539 GLTPD2A6NH11 291 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 POTEMA6NI47 508 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 OR6C70A6NIJ9 312 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 TLR3O15455 904 aaKnown RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 GMDSO60547 372 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 GNRH1P01148 92 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 AMHP03971 560 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 WEE2P0C1S8 567 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 CPB1P15086 417 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 DEFA1P59665 94 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 DEFA3P59666 94 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 ERVFC1P60507 584 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 ERVK-8P63133 956 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 PICALMQ13492 652 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 ART3Q13508 389 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 SLC9B1Q4ZJI4 515 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 TTC39BQ5VTQ0 682 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-214ENST00000540539 FAM160B1Q5W0V3 765 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 KRT79Q5XKE5 535 aa9.44□□□□□ -0.9
CLIP1-214ENST00000540539 SULT1C3Q6IMI6 304 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms