RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 MROH6A6NGR9 719 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 FADS2P1A8MWK0 482 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 CCL22O00626 93 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 LMNAP02545 664 aaKnown RBP12.96□□□□□ -0.33
CCDC42-202ENST00000539522 ZNF30P17039 623 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 HNRNPA2B1P22626 353 aaKnown RBP12.96□□□□□ -0.33
CCDC42-202ENST00000539522 HMGCLP35914 325 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 MPLP40238 635 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 CSNK1EP49674 416 aaKnown RBP12.96□□□□□ -0.33
CCDC42-202ENST00000539522 CRADDP78560 199 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 POU6F1Q14863 301 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 ACOX1Q15067 660 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 CCDC38Q502W7 563 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 SETMARQ53H47 684 aaPredicted RBP12.96□□□□□ -0.33
CCDC42-202ENST00000539522 BEND6Q5SZJ8 279 aaPredicted RBP12.96□□□□□ -0.33
CCDC42-202ENST00000539522 HENMT1Q5T8I9 393 aaKnown RBP12.96□□□□□ -0.33
CCDC42-202ENST00000539522 NAPEPLDQ6IQ20 393 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 HIBCHQ6NVY1 386 aaPredicted RBP12.96□□□□□ -0.33
CCDC42-202ENST00000539522 EMBQ6PCB8 327 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 OR13H1Q8NG92 308 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 OR13C4Q8NGS5 318 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 PTCD2Q8WV60 388 aaKnown RBP12.96□□□□□ -0.33
CCDC42-202ENST00000539522 ART4Q93070 314 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 SERPINB12Q96P63 405 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 LGR4Q9BXB1 951 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 TSPYL1Q9H0U9 437 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 MIR1-1HGQ9H1L0 117 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 ANAPC5Q9UJX4 755 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 TPX2Q9ULW0 747 aaKnown RBP12.96□□□□□ -0.33
CCDC42-202ENST00000539522 DMTF1Q9Y222 760 aa12.96□□□□□ -0.33
CCDC42-202ENST00000539522 PRAMEF26H0Y7S4 382 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 GOLGA8MH3BSY2 632 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 SMAPO00193 183 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 BCAT2O15382 392 aaPredicted RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 PSMD3O43242 534 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 LZTS3O60299 673 aaPredicted RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 BANF1O75531 89 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 SEC31AO94979 1220 aaKnown RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 SLC4A1P02730 911 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 FUCA1P04066 466 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 RETP07949 1114 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 TRIM23P36406 574 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 ARSDP51689 593 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 PLTPP55058 493 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 RACK1P63244 317 aaKnown RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 XIAPP98170 497 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 DPTQ07507 201 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 CDH17Q12864 832 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 INPP5AQ14642 412 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 SF3A2Q15428 464 aaKnown RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 WDR45BQ5MNZ6 344 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 FNBP1LQ5T0N5 605 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 IZUMO3Q5VZ72 239 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 ESRP1Q6NXG1 681 aaKnown RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 PNCKQ6P2M8 343 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 LRRC8BQ6P9F7 803 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 SLC23A3Q6PIS1 610 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 ZDHHC24Q6UX98 284 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 GLT6D1Q7Z4J2 308 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 RGL4Q8IZJ4 473 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 PAF1Q8N7H5 531 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 PNPLA1Q8N8W4 532 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 MCUQ8NE86 351 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 DENND6BQ8NEG7 585 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 OR13J1Q8NGT2 312 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 BRSK1Q8TDC3 778 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 AENQ8WTP8 325 aaKnown RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 NUS1Q96E22 293 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 CCDC97Q96F63 343 aaPredicted RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 RIOK2Q9BVS4 552 aaKnown RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 FOXP3Q9BZS1 431 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 IL26Q9NPH9 171 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 SYBUQ9NX95 663 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 NFKBIL1Q9UBC1 381 aaPredicted RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 MTRF1LQ9UGC7 380 aaKnown RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 SLC2A6Q9UGQ3 507 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 PCDHGA5Q9Y5G8 931 aa12.95□□□□□ -0.34
CCDC42-202ENST00000539522 PCYT1BQ9Y5K3 369 aaPredicted RBP12.95□□□□□ -0.34
CCDC42-202ENST00000539522 A0A1B0GTW7 788 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 A0A1B0GVT2 93 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 CCDC78A2IDD5 438 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 GOLGA6CA6NDK9 693 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 GOLGA6BA6NDN3 693 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 E7EVH7 732 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 ATP8B1O43520 1251 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 PCCBP05166 539 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 GOLGA6DP0CG33 693 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 PRSS56P0CW18 603 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 MYBL2P10244 700 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 MGAT1P26572 445 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 ITGA8P53708 1063 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 SESN2P58004 480 aaPredicted RBP12.94□□□□□ -0.34
CCDC42-202ENST00000539522 IRX4P78413 519 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 CDK16Q00536 496 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 SPEM2Q0P670 501 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 PEX6Q13608 980 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 ARHGEF7Q14155 803 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 LRRC14Q15048 493 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 SHBQ15464 509 aa12.94□□□□□ -0.34
CCDC42-202ENST00000539522 TAF1AQ15573 450 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms