RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ZYG11BQ9C0D3 744 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 TKTL2Q9H0I9 626 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 BLZF1Q9H2G9 400 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 KCTD10Q9H3F6 313 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 SERTAD1Q9UHV2 236 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 MFHAS1Q9Y4C4 1052 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 LRP4O75096 1905 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 TRGV8A0A0C4DH27 118 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 MED7O43513 233 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 SRGAP2O75044 1071 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 KLK3P07288 261 aaPredicted RBP9.11□□□□□ -0.95
USP28-205ENST00000537706 MMP12P39900 470 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 SNX16P57768 344 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 CEBPZQ03701 1054 aaKnown RBP9.11□□□□□ -0.95
USP28-205ENST00000537706 ACOX1Q15067 660 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 LLGL1Q15334 1064 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 DRC7Q8IY82 874 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 C1orf74Q96LT6 269 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 SLC2A13Q96QE2 648 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 MDFIQ99750 246 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 SPOCK3Q9BQ16 436 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 FRMD8Q9BZ67 464 aaPredicted RBP9.11□□□□□ -0.95
USP28-205ENST00000537706 WASH6PQ9NQA3 447 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 TRAF3IP3Q9Y228 551 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 PLEKHM1Q9Y4G2 1056 aa9.11□□□□□ -0.95
USP28-205ENST00000537706 A0A1W2PQJ5 194 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 PPP1R3GB7ZBB8 358 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 E5RJQ4 531 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 CCL21O00585 134 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 BUB1BO60566 1050 aaPredicted RBP9.1□□□□□ -0.95
USP28-205ENST00000537706 CPNE3O75131 537 aaKnown RBP9.1□□□□□ -0.95
USP28-205ENST00000537706 MBD3O95983 291 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 CEACAM5P06731 702 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 RAB40ALP0C0E4 278 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 AMD1P17707 334 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 GPD2P43304 727 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 TSFMP43897 325 aaKnown RBP9.1□□□□□ -0.95
USP28-205ENST00000537706 SH3BP2P78314 561 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 LRP8Q14114 963 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 MYBPC3Q14896 1274 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 E2F4Q16254 413 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 NFIL3Q16649 462 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.1□□□□□ -0.95
USP28-205ENST00000537706 CUZD1Q86UP6 607 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 ADAMTS17Q8TE56 1095 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 MTFMTQ96DP5 389 aaKnown RBP9.1□□□□□ -0.95
USP28-205ENST00000537706 CCDC120Q96HB5 630 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 ZNF641Q96N77 438 aaPredicted RBP9.1□□□□□ -0.95
USP28-205ENST00000537706 TGM7Q96PF1 710 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 RUFY1Q96T51 708 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 GSX1Q9H4S2 264 aaPredicted RBP9.1□□□□□ -0.95
USP28-205ENST00000537706 SUV39H2Q9H5I1 410 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 FGF21Q9NSA1 209 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 OLAHQ9NV23 265 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 STAP1Q9ULZ2 295 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 ACTL7AQ9Y615 435 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 MORC2Q9Y6X9 1032 aaPredicted RBP9.1□□□□□ -0.95
USP28-205ENST00000537706 CCDC168Q8NDH2 2452 aa9.1□□□□□ -0.95
USP28-205ENST00000537706 CHD5Q8TDI0 1954 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 IGLV3-10A0A075B6K4 115 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 TSPAN11A1L157 253 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 LILRA5A6NI73 299 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 BUB1O43683 1085 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 JRKO75564 520 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 C9P02748 559 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 ZSCAN22P10073 491 aaPredicted RBP9.09□□□□□ -0.95
USP28-205ENST00000537706 EPB41P11171 864 aaKnown RBP9.09□□□□□ -0.95
USP28-205ENST00000537706 AGAP20933 346 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 SYT1P21579 422 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 ARCN1P48444 511 aaKnown RBP9.09□□□□□ -0.95
USP28-205ENST00000537706 GSDMDP57764 484 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 ACY1Q03154 408 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 CDC16Q13042 620 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 ANO6Q4KMQ2 910 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 TCERG1LQ5VWI1 586 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 IZUMO3Q5VZ72 239 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 FAM199XQ6PEV8 388 aaPredicted RBP9.09□□□□□ -0.95
USP28-205ENST00000537706 TMEM110Q86TL2 294 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 BIVMQ86UB2 503 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 CBARPQ8N350 705 aaPredicted RBP9.09□□□□□ -0.95
USP28-205ENST00000537706 LZTR1Q8N653 840 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 BCORP1Q8N888 145 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 SIDT2Q8NBJ9 832 aaKnown RBP9.09□□□□□ -0.95
USP28-205ENST00000537706 CCDC47Q96A33 483 aaKnown RBP9.09□□□□□ -0.95
USP28-205ENST00000537706 NUS1Q96E22 293 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 FOXC2Q99958 501 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 HERPUD2Q9BSE4 406 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 MAGEH1Q9H213 219 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 RETREG1Q9H6L5 497 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 ATP6V1DQ9Y5K8 247 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 OR5K4A6NMS3 321 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 PEX12O00623 359 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 TMCC1O94876 653 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 CD160O95971 181 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 MAPKAPK2P49137 400 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 ARL4DP49703 201 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 POLR2LP62875 67 aaKnown RBP9.09□□□□□ -0.95
USP28-205ENST00000537706 RBPJQ06330 500 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 TUBB3Q13509 450 aa9.09□□□□□ -0.95
USP28-205ENST00000537706 MEA1Q16626 185 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms