RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CDK5RAP2Q96SN8 1893 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 CELSR3Q9NYQ7 3312 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 FANCMQ8IYD8 2048 aa4.11□□□□□ -1.75
CD44-235ENST00000532339 FAM90A20PA6NIJ5 464 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 E7EVH7 732 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 HTATSF1O43719 755 aaKnown RBP4.1□□□□□ -1.75
CD44-235ENST00000532339 LRP3O75074 770 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 MBD4O95243 580 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 PRB1P04280 392 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 LCKP06239 509 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 IGFBP2P18065 325 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 BDNFP23560 247 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 TNFRSF8P28908 595 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 AARSP49588 968 aaKnown RBP eCLIP4.1□□□□□ -1.75
CD44-235ENST00000532339 TUBP50607 506 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 UBE3AQ05086 875 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 EGR4Q05215 589 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 TCP10Q12799 353 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 G3BP1Q13283 466 aaKnown RBP eCLIP4.1□□□□□ -1.75
CD44-235ENST00000532339 EPC2Q52LR7 807 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 Q5PR19 223 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 WASHC2DQ5SRD0 308 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 C10orf76Q5T2E6 689 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 ANKRD40Q6AI12 368 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 TRABD2AQ86V40 505 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 SPATA2LQ8IUW3 424 aaPredicted RBP4.1□□□□□ -1.75
CD44-235ENST00000532339 DCP1BQ8IZD4 617 aaKnown RBP4.1□□□□□ -1.75
CD44-235ENST00000532339 CPT1BQ92523 772 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 SUSD6Q92537 303 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 HTRA1Q92743 480 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 MAELQ96JY0 434 aaKnown RBP4.1□□□□□ -1.75
CD44-235ENST00000532339 COG8Q96MW5 612 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 MECRQ9BV79 373 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 ISCUQ9H1K1 167 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 ABHD16BQ9H3Z7 469 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 MAP6D1Q9H9H5 199 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 MIS18AQ9NYP9 233 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 NDUFAF4Q9P032 175 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.1□□□□□ -1.75
CD44-235ENST00000532339 KCND3Q9UK17 655 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 SLC13A4Q9UKG4 626 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 NFU1Q9UMS0 254 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 ICKQ9UPZ9 632 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.1□□□□□ -1.75
CD44-235ENST00000532339 MAPK8IP3Q9UPT6 1336 aa4.1□□□□□ -1.75
CD44-235ENST00000532339 COL11A1P12107 1806 aaPredicted RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 LOC105369274A0A096LPK9 316 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 LOC102723532A0A0G2JNH3 316 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 A6NLC8 198 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 SLC38A8A6NNN8 435 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 ACOT8O14734 319 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 LINC01565O15544 149 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 MSI1O43347 362 aaKnown RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 CNMDO75829 334 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 CNPP09543 421 aaKnown RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 ALDOCP09972 364 aaKnown RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 RXRAP19793 462 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 SERPINA4P29622 427 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 RXRGP48443 463 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 RASSF2P50749 326 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 LIMK1P53667 647 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 BACE1P56817 501 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 TAS2R50P59544 299 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 KRTAP10-7P60409 375 aaPredicted RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 ROR2Q01974 943 aaKnown RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 LTBQ06643 244 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 CHRNDQ07001 517 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 PMPCAQ10713 525 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 SF3A3Q12874 501 aaKnown RBP eCLIP4.09□□□□□ -1.75
CD44-235ENST00000532339 SLC12A1Q13621 1099 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 GALNT3Q14435 633 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 ZNF528Q3MIS6 628 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 ALG10Q5BKT4 473 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 ALG10BQ5I7T1 473 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 ZNF324BQ6AW86 544 aaPredicted RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 DGAT2L7PQ6IED9 249 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 CAPRIN2Q6IMN6 1127 aaKnown RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 C1orf122Q6ZSJ8 110 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 BBS12Q6ZW61 710 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 RSRC2Q7L4I2 434 aaKnown RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 SYT13Q7L8C5 426 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 KDELC2Q7Z4H8 507 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 TMCO2Q7Z6W1 182 aaPredicted RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 OR4N4Q8N0Y3 316 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 EXD3Q8N9H8 876 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 C7orf57Q8NEG2 295 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 CEP70Q8NHQ1 597 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 HMGB4Q8WW32 186 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 GOLGA1Q92805 767 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 KAT2AQ92830 837 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 NEUROG1Q92886 237 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 MED30Q96HR3 178 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 REXO5Q96IC2 774 aaKnown RBP4.09□□□□□ -1.75
CD44-235ENST00000532339 SLC26A6Q9BXS9 759 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 FTOQ9C0B1 505 aaKnown RBP eCLIP4.09□□□□□ -1.75
CD44-235ENST00000532339 LMAN2LQ9H0V9 348 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 SIL1Q9H173 461 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 TRPV6Q9H1D0 765 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 UNC45AQ9H3U1 944 aa4.09□□□□□ -1.75
CD44-235ENST00000532339 ZHX3Q9H4I2 956 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms