RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 SIRPGQ9P1W8 387 aa13.81□□□□□ -0.2
SYNPO-205ENST00000522122 AHDC1Q5TGY3 1603 aaPredicted RBP13.81□□□□□ -0.2
SYNPO-205ENST00000522122 EFCAB10A6NFE3 127 aa13.81□□□□□ -0.2
SYNPO-205ENST00000522122 CLTBP09497 229 aa13.81□□□□□ -0.2
SYNPO-205ENST00000522122 CES1P23141 567 aa13.81□□□□□ -0.2
SYNPO-205ENST00000522122 TUSC3Q13454 348 aa13.81□□□□□ -0.2
SYNPO-205ENST00000522122 CYP2A13Q16696 494 aa13.81□□□□□ -0.2
SYNPO-205ENST00000522122 SH3PXD2AQ5TCZ1 1133 aa13.81□□□□□ -0.2
SYNPO-205ENST00000522122 PROSER1Q86XN7 944 aa13.81□□□□□ -0.2
SYNPO-205ENST00000522122 AGO3Q9H9G7 860 aaKnown RBP13.81□□□□□ -0.2
SYNPO-205ENST00000522122 TDRKHQ9Y2W6 561 aaKnown RBP13.81□□□□□ -0.2
SYNPO-205ENST00000522122 FADS3Q9Y5Q0 445 aa13.81□□□□□ -0.2
SYNPO-205ENST00000522122 TSPAN1O60635 241 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 MFN2O95140 757 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 DPYSL2Q16555 572 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 CA9Q16790 459 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 ZCCHC8Q6NZY4 707 aaKnown RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 KIAA0408Q6ZU52 694 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 DPP10Q8N608 796 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 ELMO1Q92556 727 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 NACC2Q96BF6 587 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 C19orf60Q96EN9 201 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 BBS4Q96RK4 519 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 ATP13A3Q9H7F0 1226 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 SPG21Q9NZD8 308 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 SLC27A5Q9Y2P5 690 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 PCDHB9Q9Y5E1 797 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 SCAMP3O14828 347 aaKnown RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 PAICSP22234 425 aaKnown RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 MAGEA10P43363 369 aaPredicted RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 RALGDSQ12967 914 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 SETMARQ53H47 684 aaPredicted RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 MBLAC2Q68D91 279 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 CDCA2Q69YH5 1023 aaPredicted RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 EPHX4Q8IUS5 362 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 OFCC1Q8IZS5 231 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 EZH1Q92800 747 aaPredicted RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 MAGEL2Q9UJ55 1249 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 CNTN6Q9UQ52 1028 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 NHSL1Q5SYE7 1610 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 KPNA5O15131 536 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 MSI1O43347 362 aaKnown RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 PQBP1O60828 265 aaKnown RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 LRIG2O94898 1065 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 METTL18O95568 372 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 HDCP19113 662 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 CCNCP24863 283 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 CLDN10P78369 228 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 SLC10A6Q3KNW5 377 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 C6orf52Q5T4I8 152 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 TRAPPC5Q8IUR0 188 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 CPSF7Q8N684 471 aaKnown RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 ZNF540Q8NDQ6 660 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 KCNU1A8MYU2 1149 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 L1CAMP32004 1257 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 MC4RP32245 332 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 SLC9A4Q6AI14 798 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 MRPL48Q96GC5 212 aaKnown RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 OR52E6Q96RD3 313 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 HNRNPABQ99729 332 aaKnown RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 TSEN34Q9BSV6 310 aaKnown RBP13.8□□□□□ -0.2
SYNPO-205ENST00000522122 RHOBTB2Q9BYZ6 727 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 ZDHHC6Q9H6R6 413 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 TMPRSS4Q9NRS4 437 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 DTLQ9NZJ0 730 aa13.8□□□□□ -0.2
SYNPO-205ENST00000522122 SEC24AO95486 1093 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 T-ENOLP0DO92 83 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 GLUD2P49448 558 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 NRLP54845 237 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 ITGA1P56199 1179 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 CDC42P60953 191 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 LSM3P62310 102 aaKnown RBP13.79□□□□□ -0.2
SYNPO-205ENST00000522122 HERC3Q15034 1050 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 ANGPT1Q15389 498 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 LSM12Q3MHD2 195 aaKnown RBP13.79□□□□□ -0.2
SYNPO-205ENST00000522122 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.79□□□□□ -0.2
SYNPO-205ENST00000522122 OR2T34Q8NGX1 318 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 OR2T3Q8NH03 318 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 WDR36Q8NI36 951 aaKnown RBP13.79□□□□□ -0.2
SYNPO-205ENST00000522122 DQX1Q8TE96 717 aaKnown RBP13.79□□□□□ -0.2
SYNPO-205ENST00000522122 REXO5Q96IC2 774 aaKnown RBP13.79□□□□□ -0.2
SYNPO-205ENST00000522122 H3BNX3 289 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 TK2O00142 265 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 SGTAO43765 313 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 MSCO60682 206 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 RPN2P04844 631 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 CAPZA2P47755 286 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 NR1D2Q14995 579 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 SPATA19Q7Z5L4 167 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 ZNF557Q8N988 423 aaPredicted RBP13.79□□□□□ -0.2
SYNPO-205ENST00000522122 OR2T12Q8NG77 320 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 UTP4Q969X6 686 aaKnown RBP13.79□□□□□ -0.2
SYNPO-205ENST00000522122 SQORQ9Y6N5 450 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 MPP1Q00013 466 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 BTN2A3PQ96KV6 586 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 PANX1Q96RD7 426 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 FZD8Q9H461 694 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 C8orf4Q9NR00 106 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 IGSF9Q9P2J2 1179 aa13.79□□□□□ -0.2
SYNPO-205ENST00000522122 HMGXB4Q9UGU5 601 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms