RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 TMA16Q96EY4 203 aaKnown RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 PRICKLE1Q96MT3 831 aaPredicted RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 NPAS2Q99743 824 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 FAM192AQ9GZU8 254 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 CACNA2D2Q9NY47 1150 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 ADA2Q9NZK5 511 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 RNF112Q9ULX5 631 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 DTNAQ9Y4J8 743 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 SPO11Q9Y5K1 396 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 OAS3Q9Y6K5 1087 aaKnown RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 UBA6A0AVT1 1052 aaPredicted RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 GOLGA8CPA6NN73 597 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 STX16-NPEPL1H3BU86 382 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 STX16O14662 325 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 ACOT8O14734 319 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 NRP2O60462 931 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 VPS26AO75436 327 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 GJB3O75712 270 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 GJB5O95377 273 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 CXCL10P02778 98 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 PIRTP0C851 137 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 PIM1P11309 404 aaPredicted RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 GFAPP14136 432 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 HMGA1P17096 107 aaKnown RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 PEX2P28328 305 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 HSPA13P48723 471 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 CLCN4P51793 760 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 PKNOX1P55347 436 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 ADGRE1Q14246 886 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 TRIM25Q14258 630 aaKnown RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 PTPRCAPQ14761 206 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 OR4D1Q15615 310 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 INO80DQ53TQ3 878 aaPredicted RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 LPCAT4Q643R3 524 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 REP15Q6BDI9 236 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 OR52E8Q6IFG1 317 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 PRMT9Q6P2P2 845 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 TMEM173Q86WV6 379 aaPredicted RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 RNF168Q8IYW5 571 aaPredicted RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 FBXO39Q8N4B4 442 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 BHLHE22Q8NFJ8 381 aaPredicted RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 ZNF461Q8TAF7 563 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 BCL7CQ8WUZ0 217 aaPredicted RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 CAPNS2Q96L46 248 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 TRAPPC9Q96Q05 1148 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 C1QTNF3Q9BXJ4 246 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 KLF16Q9BXK1 252 aaPredicted RBP14.81□□□□□ -0.04
NUP54-217ENST00000514987 TNFRSF12AQ9NP84 129 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 SPAG4Q9NPE6 437 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 STOML2Q9UJZ1 356 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 SUFUQ9UMX1 484 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 PCDHGA7Q9Y5G6 932 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 RAI2Q9Y5P3 530 aa14.81□□□□□ -0.04
NUP54-217ENST00000514987 ANKRD66B4E2M5 251 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 H7C0S8 307 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 UBXN8O00124 270 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 CBX4O00257 560 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 MRASO14807 208 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 ADAM12O43184 909 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 CDK14O94921 469 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 ABLIM3O94929 683 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 STAMBPO95630 424 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 PRLP01236 227 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 F11P03951 625 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 HSPA8P11142 646 aaKnown RBP14.8□□□□□ -0.04
NUP54-217ENST00000514987 MTHFD2P13995 350 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 PKMP14618 531 aaKnown RBP14.8□□□□□ -0.04
NUP54-217ENST00000514987 VCLP18206 1134 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 FMO4P31512 558 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 ADARP55265 1226 aaKnown RBP14.8□□□□□ -0.04
NUP54-217ENST00000514987 LCP2Q13094 533 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 PFKFB4Q16877 469 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 GRAMD1BQ3KR37 738 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 SPATS1Q496A3 300 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 PABPC1LQ4VXU2 614 aaKnown RBP14.8□□□□□ -0.04
NUP54-217ENST00000514987 SFT2D3Q587I9 215 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 SAMD4BQ5PRF9 694 aaKnown RBP14.8□□□□□ -0.04
NUP54-217ENST00000514987 RNF219Q5W0B1 726 aaPredicted RBP14.8□□□□□ -0.04
NUP54-217ENST00000514987 KANK2Q63ZY3 851 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 ANKS6Q68DC2 871 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 UGT3A1Q6NUS8 523 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 STK40Q8N2I9 435 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 LPCAT1Q8NF37 534 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 C19orf43Q9BQ61 176 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 NUSAP1Q9BXS6 441 aaKnown RBP14.8□□□□□ -0.04
NUP54-217ENST00000514987 MUC3BQ9H195 1237 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 EBF3Q9H4W6 596 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 MID1IP1Q9NPA3 183 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 CROTQ9UKG9 612 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 NDUFAF1Q9Y375 327 aa14.8□□□□□ -0.04
NUP54-217ENST00000514987 MTF2Q9Y483 593 aaPredicted RBP14.8□□□□□ -0.04
NUP54-217ENST00000514987 TYW5A2RUC4 315 aaKnown RBP14.79□□□□□ -0.04
NUP54-217ENST00000514987 CARNS1A5YM72 827 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 STX7O15400 261 aaKnown RBP14.79□□□□□ -0.04
NUP54-217ENST00000514987 KLK8O60259 260 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 MLYCDO95822 493 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 KLKB1P03952 638 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 CD1EP15812 388 aa14.79□□□□□ -0.04
NUP54-217ENST00000514987 DPP6P42658 865 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms