RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 MAP3K6O95382 1288 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 PDHA1P08559 390 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 RARAP10276 462 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 FGF3P11487 239 aaPredicted RBP12.6□□□□□ -0.39
SKA1-205ENST00000494518 CD1CP29017 333 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 MMP13P45452 471 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 HCAR3P49019 387 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 ARSDP51689 593 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 TYRO3Q06418 890 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 ITKQ08881 620 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 KLHL30Q0D2K2 578 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 DPYSL2Q16555 572 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 ANO6Q4KMQ2 910 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 ARMC12Q5T9G4 340 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 CLEC17AQ6ZS10 378 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 POLNQ7Z5Q5 900 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 C17orf82Q86X59 251 aaPredicted RBP12.6□□□□□ -0.39
SKA1-205ENST00000494518 DTX1Q86Y01 620 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 PSTKQ8IV42 348 aaKnown RBP12.6□□□□□ -0.39
SKA1-205ENST00000494518 LZTR1Q8N653 840 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 ZSCAN1Q8NBB4 408 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 SCAMP4Q969E2 229 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 AGAP2Q99490 1192 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 MGME1Q9BQP7 344 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 ABCG8Q9H221 673 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 RTN4Q9NQC3 1192 aaKnown RBP12.6□□□□□ -0.39
SKA1-205ENST00000494518 TRNAU1APQ9NX07 287 aaKnown RBP12.6□□□□□ -0.39
SKA1-205ENST00000494518 MYO6Q9UM54 1294 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 BOLA1Q9Y3E2 137 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 SCINQ9Y6U3 715 aa12.6□□□□□ -0.39
SKA1-205ENST00000494518 INPP4BO15327 924 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 SOD1P00441 154 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 ITGB2P05107 769 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 ITGB6P18564 788 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 GJC1P36383 396 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 HSPA9P38646 679 aaKnown RBP12.59□□□□□ -0.39
SKA1-205ENST00000494518 MMRN1Q13201 1228 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 CLCA4Q14CN2 919 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 SNAP47Q5SQN1 464 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 TMEM164Q5U3C3 297 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 MARC1Q5VT66 337 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 LRRC66Q68CR7 880 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 USP45Q70EL2 814 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 FAM129CQ86XR2 697 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 BBS5Q8N3I7 341 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 LRRN4Q8WUT4 740 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 NSMCE1Q8WV22 266 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 ART4Q93070 314 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 AP2M1Q96CW1 435 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 RNF31Q96EP0 1072 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 OR2M4Q96R27 311 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 SEMA3CQ99985 751 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 PCDH18Q9HCL0 1135 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 STARD5Q9NSY2 213 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 OCIAD1Q9NX40 245 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 KCNK4Q9NYG8 393 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 SLC17A4Q9Y2C5 497 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 PRKAB1Q9Y478 270 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 TTLL3Q9Y4R7 772 aa12.59□□□□□ -0.39
SKA1-205ENST00000494518 PCYT1BQ9Y5K3 369 aaPredicted RBP12.59□□□□□ -0.39
SKA1-205ENST00000494518 ZNF106Q9H2Y7 1883 aaKnown RBP12.59□□□□□ -0.39
SKA1-205ENST00000494518 LRRK2Q5S007 2527 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 IGHV1OR21-1A0A087WYE8 117 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 A0A1W2PQ67 120 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 STMND1H3BQB6 276 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 MFSD11O43934 449 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 ASMTLO95671 621 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 EML2O95834 649 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 IVLP07476 585 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 CD48P09326 243 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 THRAP10827 490 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 GZMAP12544 262 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 CD82P27701 267 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 PCK1P35558 622 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 SSR1P43307 286 aaKnown RBP12.58□□□□□ -0.4
SKA1-205ENST00000494518 ZNF135P52742 658 aaPredicted RBP12.58□□□□□ -0.4
SKA1-205ENST00000494518 LIMK2P53671 638 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 KRT81Q14533 505 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 NR1D2Q14995 579 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 TDRD12Q587J7 1177 aaKnown RBP12.58□□□□□ -0.4
SKA1-205ENST00000494518 CCDC183Q5T5S1 534 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 TECPR1Q7Z6L1 1165 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 CPNE8Q86YQ8 564 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 CBARPQ8N350 705 aaPredicted RBP12.58□□□□□ -0.4
SKA1-205ENST00000494518 IL22RA1Q8N6P7 574 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 SLC37A2Q8TED4 501 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 PIH1D2Q8WWB5 315 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 SCRN2Q96FV2 425 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 NAP1L5Q96NT1 182 aaPredicted RBP12.58□□□□□ -0.4
SKA1-205ENST00000494518 GBP4Q96PP9 640 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 TAAR9Q96RI9 348 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 MCCC1Q96RQ3 725 aaPredicted RBP12.58□□□□□ -0.4
SKA1-205ENST00000494518 FUCA2Q9BTY2 467 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 CDH19Q9H159 772 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 MRPL47Q9HD33 250 aaKnown RBP12.58□□□□□ -0.4
SKA1-205ENST00000494518 AIPL1Q9NZN9 384 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 B3GALT1Q9Y5Z6 326 aa12.58□□□□□ -0.4
SKA1-205ENST00000494518 EFCAB7A8K855 629 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 A8MU76 341 aa12.57□□□□□ -0.4
SKA1-205ENST00000494518 PSMD11O00231 422 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms