RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 PGM3O95394 542 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 PRLP01236 227 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 FGF1P05230 155 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 RBP1P09455 135 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 CTPS1P17812 591 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 ITGB6P18564 788 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 ME2P23368 584 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 GKP32189 559 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 ATP5C1P36542 298 aaKnown RBP12.42□□□□□ -0.42
HMGN1-220ENST00000492280 GRIA2P42262 883 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 STC1P52823 247 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 OXCT1P55809 520 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 NRF1Q16656 503 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 C18orf21Q32NC0 220 aaPredicted RBP12.42□□□□□ -0.42
HMGN1-220ENST00000492280 RETREG3Q86VR2 466 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 TADA1Q96BN2 335 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 MUC3BQ9H195 1237 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 MEAF6Q9HAF1 191 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 TLR9Q9NR96 1032 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 UBA2Q9UBT2 640 aaPredicted RBP12.42□□□□□ -0.42
HMGN1-220ENST00000492280 FCF1Q9Y324 198 aaKnown RBP12.42□□□□□ -0.42
HMGN1-220ENST00000492280 SLCO1B7G3V0H7 640 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 H3BNC9 293 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 K7ERQ8 282 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 SMIM24O75264 130 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 RNASEH2AO75792 299 aaKnown RBP12.42□□□□□ -0.42
HMGN1-220ENST00000492280 IMPDH1P20839 514 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 MZF1P28698 734 aaPredicted RBP12.42□□□□□ -0.42
HMGN1-220ENST00000492280 EEF1DP29692 281 aaKnown RBP12.42□□□□□ -0.42
HMGN1-220ENST00000492280 ARL1P40616 181 aaPredicted RBP12.42□□□□□ -0.42
HMGN1-220ENST00000492280 TWF1Q12792 350 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 TLR1Q15399 786 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 VPS26BQ4G0F5 336 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 HABP4Q5JVS0 413 aaKnown RBP12.42□□□□□ -0.42
HMGN1-220ENST00000492280 NAIF1Q69YI7 327 aaPredicted RBP12.42□□□□□ -0.42
HMGN1-220ENST00000492280 FAM45BPQ6NSW5 357 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.42□□□□□ -0.421e-8■■■□□ 16.2
HMGN1-220ENST00000492280 FAM45AQ8TCE6 357 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 WFDC5Q8TCV5 224 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 TRIB3Q96RU7 358 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 TUBB1Q9H4B7 451 aa12.42□□□□□ -0.42
HMGN1-220ENST00000492280 GBF1Q92538 1859 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 MRASO14807 208 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 CLASP2O75122 1294 aaKnown RBP12.41□□□□□ -0.42
HMGN1-220ENST00000492280 PAPSS2O95340 614 aaPredicted RBP12.41□□□□□ -0.42
HMGN1-220ENST00000492280 RHOCP08134 193 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 ALPIP09923 528 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 VCLP18206 1134 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 UGT1A6P19224 532 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 HLA-DPA1P20036 260 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 CA5AP35218 305 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 SLC7A2P52569 658 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 PTPRNQ16849 979 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 C6orf52Q5T4I8 152 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 RNF219Q5W0B1 726 aaPredicted RBP12.41□□□□□ -0.42
HMGN1-220ENST00000492280 MRNIPQ6NTE8 343 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 FUNDC1Q8IVP5 155 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 BRSK1Q8TDC3 778 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 TWIST2Q8WVJ9 160 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 FEM1CQ96JP0 617 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 CNBD2Q96M20 576 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 ACOX2Q99424 681 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 SERPINI1Q99574 410 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 C1orf50Q9BV19 199 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 MRPL1Q9BYD6 325 aaKnown RBP12.41□□□□□ -0.42
HMGN1-220ENST00000492280 VCXQ9H320 206 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 OLA1Q9NTK5 396 aaKnown RBP12.41□□□□□ -0.42
HMGN1-220ENST00000492280 APPL1Q9UKG1 709 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 PSMD13Q9UNM6 376 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.41□□□□□ -0.42
HMGN1-220ENST00000492280 ARVCFO00192 962 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 BTN3A1O00481 513 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 INSIG1O15503 277 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 STC2O76061 302 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 NDST3O95803 873 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 ZNF140P52738 457 aaPredicted RBP12.41□□□□□ -0.42
HMGN1-220ENST00000492280 DIO3P55073 304 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 HERVK_113P63132 956 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 CDKL1Q00532 357 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 FOLH1Q04609 750 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 TRAF2Q12933 501 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 NOGQ13253 232 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 MED21Q13503 144 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 ZRANB3Q5FWF4 1079 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 PPP2R3CQ969Q6 453 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 CAPNS2Q96L46 248 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 LRGUKQ96M69 825 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 PPP1R2P1Q96PQ5 205 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 ATOH8Q96SQ7 321 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 AARSD1Q9BTE6 412 aaKnown RBP12.41□□□□□ -0.42
HMGN1-220ENST00000492280 ERVK-6Q9BXR3 956 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 EML4Q9HC35 981 aaKnown RBP12.41□□□□□ -0.42
HMGN1-220ENST00000492280 GPBP1L1Q9HC44 474 aaPredicted RBP12.41□□□□□ -0.42
HMGN1-220ENST00000492280 SCUBE2Q9NQ36 999 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 EGFL7Q9UHF1 273 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 RIMS3Q9UJD0 308 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 DNMT3LQ9UJW3 386 aa12.41□□□□□ -0.42
HMGN1-220ENST00000492280 PRPF19Q9UMS4 504 aaKnown RBP12.41□□□□□ -0.42
HMGN1-220ENST00000492280 ZNF840PA6NDX5 716 aa12.4□□□□□ -0.42
HMGN1-220ENST00000492280 ACOT8O14734 319 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms