RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 MAP3K6O95382 1288 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 SOD1P00441 154 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 IVLP07476 585 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 CD1CP29017 333 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 ALDH4A1P30038 563 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 GARSP41250 739 aaKnown RBP12.16□□□□□ -0.46
VPS16-208ENST00000487461 SSR1P43307 286 aaKnown RBP12.16□□□□□ -0.46
VPS16-208ENST00000487461 GPR1P46091 355 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 UBASH3AP57075 661 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 ZBED6P86452 979 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 DSC2Q02487 901 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 GALNT2Q10471 571 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 ILF3Q12906 894 aaKnown RBP eCLIP12.16□□□□□ -0.46
VPS16-208ENST00000487461 DPYSL3Q14195 570 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 PAFAH1B3Q15102 231 aaKnown RBP12.16□□□□□ -0.46
VPS16-208ENST00000487461 HADHQ16836 314 aaKnown RBP12.16□□□□□ -0.46
VPS16-208ENST00000487461 CCDC122Q5T0U0 273 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 PHF19Q5T6S3 580 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 LRRC66Q68CR7 880 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 ALKBH5Q6P6C2 394 aaKnown RBP12.16□□□□□ -0.46
VPS16-208ENST00000487461 SLC30A9Q6PML9 568 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 USP45Q70EL2 814 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 ZNF438Q7Z4V0 828 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 PIM3Q86V86 326 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 ZFAND4Q86XD8 727 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 NAGSQ8N159 534 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.16□□□□□ -0.46
VPS16-208ENST00000487461 LRRN4Q8WUT4 740 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 MAML1Q92585 1016 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 SCAMP4Q969E2 229 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 TMEM159Q96B96 161 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 SCARF2Q96GP6 870 aaPredicted RBP12.16□□□□□ -0.46
VPS16-208ENST00000487461 AGAP2Q99490 1192 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 CMKLR1Q99788 373 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 FOXJ2Q9P0K8 574 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 RCOR3Q9P2K3 495 aaPredicted RBP12.16□□□□□ -0.46
VPS16-208ENST00000487461 CHKBQ9Y259 395 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 COL6A6A6NMZ7 2263 aa12.16□□□□□ -0.46
VPS16-208ENST00000487461 A0A0J9YYE9 177 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 C9orf172C9J069 976 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 MATN3O15232 486 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 PPM1DO15297 605 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 CPNE6O95741 557 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 PRLP01236 227 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 TRBC1P01850 177 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 CCL4P13236 92 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 KRT10P13645 584 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 MAPK10P53779 464 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 NR1D2Q14995 579 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 C16orf72Q14CZ0 275 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 ANKRD20A8PQ5CZ79 823 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 NKAIN2Q5VXU1 208 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 NCBP2-AS2Q69YL0 99 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 ALG1LQ6GMV1 187 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 DOK6Q6PKX4 331 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 ADAMTSL4Q6UY14 1074 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 TRIM74Q86UV6 250 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 NLRP8Q86W28 1048 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 KCTD6Q8NC69 237 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 ARRDC2Q8TBH0 407 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 AP2M1Q96CW1 435 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 TSGA13Q96PP4 275 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 NUDT22Q9BRQ3 303 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 POLR1EQ9GZS1 481 aaKnown RBP12.15□□□□□ -0.46
VPS16-208ENST00000487461 RBM22Q9NW64 420 aaKnown RBP eCLIP12.15□□□□□ -0.46
VPS16-208ENST00000487461 NENFQ9UMX5 172 aa12.15□□□□□ -0.46
VPS16-208ENST00000487461 IGHV5-10-1A0A0J9YXX1 117 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 SYCE3A1L190 88 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 LIPCP11150 499 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 CES1P23141 567 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 CCNCP24863 283 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 GPR3P46089 330 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 STC1P52823 247 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 TAS2R40P59535 323 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 NIPAL4Q0D2K0 466 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 SLC10A2Q12908 348 aaPredicted RBP12.14□□□□□ -0.47
VPS16-208ENST00000487461 IFI16Q16666 785 aaKnown RBP12.14□□□□□ -0.47
VPS16-208ENST00000487461 LINC00303Q3SY05 128 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 MAP9Q49MG5 647 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 PYCR3Q53H96 274 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 MARK2Q7KZI7 788 aaKnown RBP12.14□□□□□ -0.47
VPS16-208ENST00000487461 NDUFAF2Q8N183 169 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 PQLC3Q8N755 202 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 EXD3Q8N9H8 876 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 RCBTB1Q8NDN9 531 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 ZNF564Q8TBZ8 553 aaPredicted RBP12.14□□□□□ -0.47
VPS16-208ENST00000487461 FATE1Q969F0 183 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 MED8Q96G25 268 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 RIOK2Q9BVS4 552 aaKnown RBP12.14□□□□□ -0.47
VPS16-208ENST00000487461 LUC7L2Q9Y383 392 aaKnown RBP12.14□□□□□ -0.47
VPS16-208ENST00000487461 SCN8AQ9UQD0 1980 aa12.14□□□□□ -0.47
VPS16-208ENST00000487461 FLNBO75369 2602 aaKnown RBP12.13□□□□□ -0.47
VPS16-208ENST00000487461 TRBV23OR9-2A0A075B6M9 112 aa12.13□□□□□ -0.47
VPS16-208ENST00000487461 B8ZZF3 427 aa12.13□□□□□ -0.47
VPS16-208ENST00000487461 INPP4BO15327 924 aa12.13□□□□□ -0.47
VPS16-208ENST00000487461 PROSCO94903 275 aa12.13□□□□□ -0.47
VPS16-208ENST00000487461 CLDN7O95471 211 aa12.13□□□□□ -0.47
VPS16-208ENST00000487461 GYPCP04921 128 aa12.13□□□□□ -0.47
VPS16-208ENST00000487461 ZNF30P17039 623 aa12.13□□□□□ -0.47
VPS16-208ENST00000487461 WT1P19544 449 aaPredicted RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms