RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 CHURC1-FNTBB4DL54 471 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 ALOX5P09917 674 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 AKIRIN2Q53H80 203 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 CWF19L1Q69YN2 538 aaKnown RBP16.42■□□□□ 0.22
COL7A1-210ENST00000487017 PMF1Q6P1K2 205 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 BHLHB9Q6PI77 547 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 GPR142Q7Z601 462 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 FAM20CQ8IXL6 584 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 CRISPLD1Q9H336 500 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 PNPLA8Q9NP80 782 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 ZDHHC18Q9NUE0 388 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 OGDHLQ9ULD0 1010 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 H3BNX3 289 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 TLR5O60602 858 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 IDH3AP50213 366 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 MCRS1Q96EZ8 462 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 SQORQ9Y6N5 450 aa16.42■□□□□ 0.22
COL7A1-210ENST00000487017 SCAMP3O14828 347 aaKnown RBP16.41■□□□□ 0.22
COL7A1-210ENST00000487017 OR10H3O60404 316 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 LRIG2O94898 1065 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 OR6A2O95222 327 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 NR2F1P10589 423 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 CREB1P16220 341 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 STAT5AP42229 794 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 FSTL1Q12841 308 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 QPRTQ15274 297 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 TOMM20Q15388 145 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 HSDL1Q3SXM5 330 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 KLHL12Q53G59 568 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 RHBDF2Q6PJF5 856 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 CDH24Q86UP0 819 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 MOSPD2Q8NHP6 518 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 NAT14Q8WUY8 206 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 BTBD9Q96Q07 612 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 KIFC1Q9BW19 673 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 SMIM28A0A1B0GU29 152 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 MTHFRP42898 656 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 ABRQ12979 859 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 LPIN1Q14693 890 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 PYDC2Q56P42 97 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 ZNF567Q8N184 647 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 NARS2Q96I59 477 aaKnown RBP16.41■□□□□ 0.22
COL7A1-210ENST00000487017 UNC93B1Q9H1C4 597 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 SMIM35A0A1B0GVV1 85 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 MSI1O43347 362 aaKnown RBP16.41■□□□□ 0.22
COL7A1-210ENST00000487017 ADSLP30566 484 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-210ENST00000487017 CD52P31358 61 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 BRCC3P46736 316 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 SRP54P61011 504 aaKnown RBP16.41■□□□□ 0.22
COL7A1-210ENST00000487017 SLCO6A1Q86UG4 719 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 PARP8Q8N3A8 854 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 CCDC185Q8N715 623 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 CXorf40AQ8TE69 158 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 COPS8Q99627 209 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 ABCG8Q9H221 673 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 PDZD7Q9H5P4 517 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 ARHGEF4Q9NR80 690 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 PCDHB9Q9Y5E1 797 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 HLA-DQA2P01906 255 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 CCNCP24863 283 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 LSM12Q3MHD2 195 aaKnown RBP16.41■□□□□ 0.22
COL7A1-210ENST00000487017 GPR158Q5T848 1215 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 KLHL24Q6TFL4 600 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 ZNF781Q8N8C0 355 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 SUSD6Q92537 303 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 C1QTNF7Q9BXJ2 289 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 MAFBQ9Y5Q3 323 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-210ENST00000487017 STON1Q9Y6Q2 735 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 PLIN4Q96Q06 1357 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 GRIN2DO15399 1336 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 ZBTB11O95625 1053 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-210ENST00000487017 UNGP13051 313 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-210ENST00000487017 MPP1Q00013 466 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 NDUFA5Q16718 116 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 GPAT3Q53EU6 434 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 RNF44Q7L0R7 432 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 ZNF554Q86TJ5 538 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 OR4A15Q8NGL6 344 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 TFAP2BQ92481 460 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 NDRG1Q92597 394 aaKnown RBP16.41■□□□□ 0.22
COL7A1-210ENST00000487017 DPF3Q92784 378 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 PTGFRNQ9P2B2 879 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 MKL2Q9ULH7 1088 aa16.41■□□□□ 0.22
COL7A1-210ENST00000487017 A0A1W2PQH9 124 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 IDH3BO43837 385 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 TMCC2O75069 709 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 NDUFAF6Q330K2 333 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 PARP15Q460N3 678 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 ARMCX6Q7L4S7 300 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 THAP5Q7Z6K1 395 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 GOLGA2P5Q9HBQ8 144 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 APOBEC3GQ9HC16 384 aaKnown RBP16.4■□□□□ 0.22
COL7A1-210ENST00000487017 KCNE2Q9Y6J6 123 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 PKMP14618 531 aaKnown RBP16.4■□□□□ 0.22
COL7A1-210ENST00000487017 TLX1P31314 330 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-210ENST00000487017 GPR1P46091 355 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 VPS26BQ4G0F5 336 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 RAET1GQ6H3X3 334 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 FSTL4Q6MZW2 842 aa16.4■□□□□ 0.22
COL7A1-210ENST00000487017 MFSD3Q96ES6 412 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms