RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TPI1P60174 286 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 PTP4A2Q12974 167 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 CBARPQ8N350 705 aaPredicted RBP17.1■□□□□ 0.33
VIM-204ENST00000478746 EFCAB3Q8N7B9 438 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 SSC4DQ8WTU2 575 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 DTD2Q96FN9 168 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 SCARF2Q96GP6 870 aaPredicted RBP17.1■□□□□ 0.33
VIM-204ENST00000478746 NSMCE3Q96MG7 304 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 OR2M4Q96R27 311 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 KIAA1468Q9P260 1216 aa17.1■□□□□ 0.33
VIM-204ENST00000478746 CENPEQ02224 2701 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.09■□□□□ 0.33
VIM-204ENST00000478746 SIGLEC16A6NMB1 481 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 TTLL8A6PVC2 850 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 DLGAP3O95886 979 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 F8A1P23610 371 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 NFKBIAP25963 317 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 TEAD1P28347 426 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 HTR7P34969 479 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 RENBPP51606 427 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 ZNF143P52747 638 aaPredicted RBP17.09■□□□□ 0.33
VIM-204ENST00000478746 AP1S1P61966 158 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 MAP7Q14244 749 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 ERV3-1Q14264 604 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 RFTN1Q14699 578 aaPredicted RBP17.09■□□□□ 0.33
VIM-204ENST00000478746 CAPRIN2Q6IMN6 1127 aaKnown RBP17.09■□□□□ 0.33
VIM-204ENST00000478746 TRIM72Q6ZMU5 477 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 Q6ZVL8 140 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 HSD11B1LQ7Z5J1 315 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 SFRP1Q8N474 314 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 GALNT11Q8NCW6 608 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 SLC37A2Q8TED4 501 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 PDCD6IPQ8WUM4 868 aaKnown RBP17.09■□□□□ 0.33
VIM-204ENST00000478746 SP110Q9HB58 689 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 TMEM98Q9Y2Y6 226 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 PCDHGC4Q9Y5F7 938 aa17.09■□□□□ 0.33
VIM-204ENST00000478746 A0A1W2PQ67 120 aa17.08■□□□□ 0.32
VIM-204ENST00000478746 ANKRD62A6NC57 917 aa17.08■□□□□ 0.32
VIM-204ENST00000478746 MAP3K6O95382 1288 aa17.08■□□□□ 0.32
VIM-204ENST00000478746 UNGP13051 313 aaPredicted RBP17.08■□□□□ 0.32
VIM-204ENST00000478746 DLSTP36957 453 aa17.08■□□□□ 0.32
VIM-204ENST00000478746 GPR1P46091 355 aa17.08■□□□□ 0.32
VIM-204ENST00000478746 NSFP46459 744 aaKnown RBP17.08■□□□□ 0.32
VIM-204ENST00000478746 GSCP56915 257 aaPredicted RBP17.08■□□□□ 0.32
VIM-204ENST00000478746 PYCR3Q53H96 274 aa17.08■□□□□ 0.32
VIM-204ENST00000478746 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.08■□□□□ 0.32
VIM-204ENST00000478746 LZTR1Q8N653 840 aa17.08■□□□□ 0.32
VIM-204ENST00000478746 C3orf20Q8ND61 904 aa17.08■□□□□ 0.32
VIM-204ENST00000478746 KLHL3Q9UH77 587 aa17.08■□□□□ 0.32
VIM-204ENST00000478746 TLK1Q9UKI8 766 aa17.08■□□□□ 0.32
VIM-204ENST00000478746 POLHQ9Y253 713 aa17.08■□□□□ 0.32
VIM-204ENST00000478746 TTC24A2A3L6 582 aaPredicted RBP17.07■□□□□ 0.32
VIM-204ENST00000478746 DFFAO00273 331 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 HTRA2O43464 458 aaPredicted RBP17.07■□□□□ 0.32
VIM-204ENST00000478746 RFPL1O75677 317 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 CALB1P05937 261 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 CYP2A6P11509 494 aaPredicted RBP17.07■□□□□ 0.32
VIM-204ENST00000478746 HHEXQ03014 270 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 DPTQ07507 201 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 IL10RBQ08334 325 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 NFATC2Q13469 925 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 HSP90AA4PQ58FG1 418 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 MARK2Q7KZI7 788 aaKnown RBP17.07■□□□□ 0.32
VIM-204ENST00000478746 MLKLQ8NB16 471 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 SPOCK2Q92563 424 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 SH3KBP1Q96B97 665 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 PSKH2Q96QS6 385 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 CNPY3Q9BT09 278 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 VPS16Q9H269 839 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 PHTF1Q9UMS5 762 aa17.07■□□□□ 0.32
VIM-204ENST00000478746 TEP1Q99973 2627 aaKnown RBP17.07■□□□□ 0.32
VIM-204ENST00000478746 ESPL1Q14674 2120 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 PSMD11O00231 422 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 EEF2KO00418 725 aaKnown RBP17.06■□□□□ 0.32
VIM-204ENST00000478746 DAPK3O43293 454 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 GADD45BO75293 160 aaPredicted RBP17.06■□□□□ 0.32
VIM-204ENST00000478746 KATNA1O75449 491 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 EML2O95834 649 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 CPP00450 1065 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 FURINP09958 794 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 MAPK9P45984 424 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 FOXM1Q08050 763 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 LRP8Q14114 963 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 CAMK4Q16566 473 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 C6orf15Q6UXA7 325 aaPredicted RBP17.06■□□□□ 0.32
VIM-204ENST00000478746 ARHGAP36Q6ZRI8 547 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 PHF13Q86YI8 300 aaPredicted RBP17.06■□□□□ 0.32
VIM-204ENST00000478746 GALNT13Q8IUC8 556 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 ARHGAP12Q8IWW6 846 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 CPT1CQ8TCG5 803 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 PCDHB18PQ96TA0 734 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 ULBP3Q9BZM4 244 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 STN1Q9H668 368 aaKnown RBP17.06■□□□□ 0.32
VIM-204ENST00000478746 SARS2Q9NP81 518 aaKnown RBP17.06■□□□□ 0.32
VIM-204ENST00000478746 GPATCH2LQ9NWQ4 482 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 DACH1Q9UI36 760 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 CROTQ9UKG9 612 aa17.06■□□□□ 0.32
VIM-204ENST00000478746 INPP4BO15327 924 aa17.05■□□□□ 0.32
VIM-204ENST00000478746 SOCS5O75159 536 aa17.05■□□□□ 0.32
VIM-204ENST00000478746 SEMA7AO75326 666 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms