RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 OR1D5P58170 312 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ZBED6P86452 979 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FANCCQ00597 558 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ARHGEF7Q14155 803 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 C16orf72Q14CZ0 275 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 LINC00303Q3SY05 128 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NCBP2-AS2Q69YL0 99 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ALKBH5Q6P6C2 394 aaKnown RBP12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ZNF765Q7L2R6 523 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 BBS5Q8N3I7 341 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ZDHHC1Q8WTX9 485 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PATE1Q8WXA2 126 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FAF2Q96CS3 445 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 MED8Q96G25 268 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 WDR24Q96S15 920 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 LYSMD1Q96S90 227 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CMKLR1Q99788 373 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SEMA3CQ99985 751 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 SYNDIG1Q9H7V2 258 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CBX8Q9HC52 389 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 NT5MQ9NPB1 228 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 FOXJ2Q9P0K8 574 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PDP2Q9P2J9 529 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PISDQ9UG56 409 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 ANAPC7Q9UJX3 599 aa12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 CNOT6Q9ULM6 557 aaKnown RBP12.21□□□□□ -0.45
MSH5-SAPCD1-205ENST00000476085 PRAMEF33A0A0G2JMD5 474 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 IGHV5-10-1A0A0J9YXX1 117 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 B8ZZF3 427 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 MYO1FO00160 1098 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 MFSD11O43934 449 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PRAMEF10O60809 474 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SERPINC1P01008 464 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 JMJD7P0C870 316 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ZNF30P17039 623 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CTPS1P17812 591 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CCNCP24863 283 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 HNRNPH3P31942 346 aaKnown RBP12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 STC1P52823 247 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ILF3Q12906 894 aaKnown RBP eCLIP12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SLC10A2Q12908 348 aaPredicted RBP12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SRSF6Q13247 344 aaKnown RBP12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ZSCAN23Q3MJ62 389 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PYCR3Q53H96 274 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 LRRC66Q68CR7 880 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CAVIN1Q6NZI2 390 aaKnown RBP12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 USP45Q70EL2 814 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PIM3Q86V86 326 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CPNE8Q86YQ8 564 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 NRSN1Q8IZ57 195 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PQLC3Q8N755 202 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 EXD3Q8N9H8 876 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 USP7Q93009 1102 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SCAMP4Q969E2 229 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 IQCDQ96DY2 449 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 AGAP2Q99490 1192 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 NUDT22Q9BRQ3 303 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RDH14Q9HBH5 336 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 MOSPD1Q9UJG1 213 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PLEKHM1Q9Y4G2 1056 aa12.2□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 IGHV1OR21-1A0A087WYE8 117 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 HGSO14964 777 aaPredicted RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 DNAJC6O75061 913 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ZIC2O95409 532 aaPredicted RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 GYPCP04921 128 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CCL4P13236 92 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 WT1P19544 449 aaPredicted RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 CD82P27701 267 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 GNPDA1P46926 289 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 FASLGP48023 281 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 LIMK2P53671 638 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RPL26P61254 145 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 NIPAL4Q0D2K0 466 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TRA2AQ13595 282 aaKnown RBP eCLIP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 IFI16Q16666 785 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ASTE1Q2TB18 679 aaPredicted RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TDRD12Q587J7 1177 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ANKRD20A8PQ5CZ79 823 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 DENND2CQ68D51 928 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RAET1GQ6H3X3 334 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 SLC30A9Q6PML9 568 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 XKR5Q6UX68 686 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 USP53Q70EK8 1073 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 LUZP1Q86V48 1076 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ZFAND4Q86XD8 727 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 JAMLQ86YT9 394 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PAF1Q8N7H5 531 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 NSMCE1Q8WV22 266 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 AP2M1Q96CW1 435 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ZNF670Q9BS34 389 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TDRD1Q9BXT4 1180 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 POLR1EQ9GZS1 481 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 RPL26L1Q9UNX3 145 aaKnown RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 TMEM98Q9Y2Y6 226 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PCDHGA3Q9Y5H0 932 aa12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PCYT1BQ9Y5K3 369 aaPredicted RBP12.19□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PROSCO94903 275 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 ITGB2P05107 769 aa12.18□□□□□ -0.46
MSH5-SAPCD1-205ENST00000476085 PYGLP06737 847 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms