RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 PFDN6O15212 129 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 KERAO60938 352 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 SMIM24O75264 130 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 PSMG1O95456 288 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 ADH1AP07327 375 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 FGF4P08620 206 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 ACRP10323 421 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 THRAP10827 490 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 PKMP14618 531 aaKnown RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 NCF2P19878 526 aaPredicted RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 EPHA3P29320 983 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 PMLP29590 882 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 HMGCLP35914 325 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 TTPAP49638 278 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 ACTR3P61158 418 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 HERVK_113P63132 956 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 LMAN2Q12907 356 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 PDAP1Q13442 181 aaKnown RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 OR4D1Q15615 310 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 CDKN3Q16667 212 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 ACCSLQ4AC99 568 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 AARS2Q5JTZ9 985 aaKnown RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 CTSL3PQ5NE16 218 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 ARMC12Q5T9G4 340 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 PSAPL1Q6NUJ1 521 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 RETSATQ6NUM9 610 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 MYLK4Q86YV6 388 aaPredicted RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 RNF135Q8IUD6 432 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 BBS7Q8IWZ6 715 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.78□□□□□ -0.84
USP39-214ENST00000474572 PIANPQ8IYJ0 282 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 AFAP1L2Q8N4X5 818 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 NKAPQ8N5F7 415 aaKnown RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 POU5F2Q8N7G0 328 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 CCNYL1Q8N7R7 359 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 KREMEN2Q8NCW0 462 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 CEP70Q8NHQ1 597 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 RP9Q8TA86 221 aaKnown RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 AGR3Q8TD06 166 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 KCNJ9Q92806 393 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 LENG8Q96PV6 779 aaPredicted RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 SMIM14Q96QK8 99 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 PANX3Q96QZ0 392 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 TACO1Q9BSH4 297 aaKnown RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 THTPAQ9BU02 230 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 ERVK-6Q9BXR3 956 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 ZBTB26Q9HCK0 441 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 CYP4F12Q9HCS2 524 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 TNFRSF12AQ9NP84 129 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 ACSS2Q9NR19 701 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 TAS2R13Q9NYV9 303 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 KIAA1522Q9P206 1035 aaPredicted RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 PRPF19Q9UMS4 504 aaKnown RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 FCF1Q9Y324 198 aaKnown RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 SH3BP1Q9Y3L3 701 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.78□□□□□ -0.84
USP39-214ENST00000474572 PLXNB3Q9ULL4 1909 aa9.78□□□□□ -0.84
USP39-214ENST00000474572 NUP210Q8TEM1 1887 aaPredicted RBP9.77□□□□□ -0.85
USP39-214ENST00000474572 TRBV5-4A0A0C4DH59 114 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 GOLGA8QA0A0J9YX86 632 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 A0A0J9YYE9 177 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 RGSL1A5PLK6 1076 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 GOLGA8OA6NCC3 632 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 MEI4A8MW99 385 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 TMEM233B4DJY2 109 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 GOLGA8NF8WBI6 632 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 STX16-NPEPL1H3BU86 382 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 LEFTY2O00292 366 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 GAPDHSO14556 408 aaPredicted RBP9.77□□□□□ -0.85
USP39-214ENST00000474572 UBFD1O14562 309 aaKnown RBP9.77□□□□□ -0.85
USP39-214ENST00000474572 STX16O14662 325 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 STX7O15400 261 aaKnown RBP9.77□□□□□ -0.85
USP39-214ENST00000474572 NDUFS3O75489 264 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 ZNF821O75541 412 aaPredicted RBP9.77□□□□□ -0.85
USP39-214ENST00000474572 CIB2O75838 187 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 KRT36O76013 467 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 SRP72O76094 671 aaKnown RBP9.77□□□□□ -0.85
USP39-214ENST00000474572 RHOBTB1O94844 696 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 FGF19O95750 216 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 TSPAN12O95859 305 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 MT-CO1P00395 513 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 TRBC1P01850 177 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 SLC4A1P02730 911 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 CKMP06732 381 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 PYGLP06737 847 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 RPS17P08708 135 aaKnown RBP9.77□□□□□ -0.85
USP39-214ENST00000474572 HNRNPLP14866 589 aaKnown RBP eCLIP9.77□□□□□ -0.85
USP39-214ENST00000474572 TCF3P15923 654 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 RPS3P23396 243 aaKnown RBP eCLIP9.77□□□□□ -0.853e-13■■■■□ 26.3
USP39-214ENST00000474572 DDX6P26196 483 aaKnown RBP eCLIP9.77□□□□□ -0.855e-6■■■■■ 34.8
USP39-214ENST00000474572 PTGER3P43115 390 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 ATP4BP51164 291 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 MXRA7P84157 204 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 SLC25A3Q00325 362 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 PDCD2Q16342 344 aaPredicted RBP9.77□□□□□ -0.85
USP39-214ENST00000474572 PLEKHG6Q3KR16 790 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 UGT3A2Q3SY77 523 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 ATXN7L2Q5T6C5 722 aaPredicted RBP9.77□□□□□ -0.85
USP39-214ENST00000474572 AAGABQ6PD74 315 aa9.77□□□□□ -0.85
USP39-214ENST00000474572 PAQR3Q6TCH7 311 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms