RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	MARK2	Q7KZI7	788 aa	Known RBP	11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	PID1	Q7Z2X4	250 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	PEX26	Q7Z412	305 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	SYCE1	Q8N0S2	351 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	SDR16C5	Q8N3Y7	309 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	UBL4B	Q8N7F7	174 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	ARL10	Q8N8L6	244 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	ARRDC2	Q8TBH0	407 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	OR1E3	Q8WZA6	343 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	DCBLD2	Q96PD2	775 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	MCCC1	Q96RQ3	725 aa	Predicted RBP	11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	LGR4	Q9BXB1	951 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	FSD1L	Q9BXM9	530 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	GSDMC	Q9BYG8	508 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	CLPB	Q9H078	707 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	FGF22	Q9HCT0	170 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	WDR70	Q9NW82	654 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	UBP1	Q9NZI7	540 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	PADI4	Q9UM07	663 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	SCN8A	Q9UQD0	1980 aa		11.5	□□□□□ -0.57
CPNE1-222	ENST00000473373	CCDC66	A2RUB6	948 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	GOLGA6L9	A6NEM1	432 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	ANKRD66	B4E2M5	251 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	TNFRSF10C	O14798	259 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	OPA1	O60313	960 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	PIRT	P0C851	137 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	PECAM1	P16284	738 aa	Predicted RBP	11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	RWDD2B	P57060	319 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	COPS2	P61201	443 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	SKOR1	P84550	965 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	PEX6	Q13608	980 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	TEX44	Q53QW1	395 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	FAM182A	Q5T1J6	154 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	ALS2CL	Q60I27	953 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	FOXR1	Q6PIV2	292 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	LVRN	Q6Q4G3	990 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	SLC35F3	Q8IY50	421 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	KY	Q8NBH2	561 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	SPOCK2	Q92563	424 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	KRT35	Q92764	455 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	SCAMP4	Q969E2	229 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	LRRC45	Q96CN5	670 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	HIC2	Q96JB3	615 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	OLFM3	Q96PB7	478 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	BBC3	Q96PG8	261 aa	Predicted RBP	11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	SMIM14	Q96QK8	99 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	DESI2	Q9BSY9	194 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	RIOK2	Q9BVS4	552 aa	Known RBP	11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	SPATA16	Q9BXB7	569 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	TMEM168	Q9H0V1	697 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	CDH19	Q9H159	772 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	SLC25A51	Q9H1U9	297 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	ABCG8	Q9H221	673 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	ZFYVE1	Q9HBF4	777 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	GLOD4	Q9HC38	313 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	RSPH14	Q9UHP6	348 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	PNMA8B	Q9ULN7	279 aa	Predicted RBP	11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	SHOC2	Q9UQ13	582 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	PPIL1	Q9Y3C6	166 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	DGKB	Q9Y6T7	804 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	DUSP10	Q9Y6W6	482 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	FREM2	Q5SZK8	3169 aa		11.49	□□□□□ -0.57
CPNE1-222	ENST00000473373	GCN1	Q92616	2671 aa	Known RBP	11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	EME2	A4GXA9	379 aa	Predicted RBP	11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	RCCD1	A6NED2	376 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	HACD1	B0YJ81	288 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	APOC4-APOC2	K7ER74	178 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	FZD6	O60353	706 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	CS	O75390	466 aa	Known RBP	11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	TJP3	O95049	919 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	MT-CYB	P00156	380 aa	Predicted RBP	11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	APOC2	P02655	101 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	HOXC4	P09017	264 aa	Predicted RBP	11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	GIMD1	P0DJR0	217 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	GM2A	P17900	193 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	NFKB1	P19838	968 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	PTPN3	P26045	913 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	CTNNA1	P35221	906 aa	Known RBP	11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	TRIM23	P36406	574 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	STC1	P52823	247 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	GSDMD	P57764	484 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	PTS	Q03393	145 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	CDK18	Q07002	472 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	PRPSAP1	Q14558	356 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	PPP2R5E	Q16537	467 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	QPCT	Q16769	361 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	ITPRIPL1	Q6GPH6	555 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	DARS2	Q6PI48	645 aa	Known RBP	11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	SLC30A9	Q6PML9	568 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	RBM44	Q6ZP01	1051 aa	Known RBP	11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	LYSMD3	Q7Z3D4	306 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	TRIM74	Q86UV6	250 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	GALNT13	Q8IUC8	556 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	CDKL3	Q8IVW4	592 aa	Predicted RBP	11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	NRSN1	Q8IZ57	195 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	PELI3	Q8N2H9	469 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	SLC25A41	Q8N5S1	370 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	CNTD1	Q8N815	330 aa		11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373		Q8N9G6	341 aa	Predicted RBP	11.48	□□□□□ -0.57
CPNE1-222	ENST00000473373	IPMK	Q8NFU5	416 aa		11.48	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms