RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	PPP6R3	Q5H9R7	873 aa	Predicted RBP	11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	ADAMTSL4	Q6UY14	1074 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	ZSCAN1	Q8NBB4	408 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	ZNF564	Q8TBZ8	553 aa	Predicted RBP	11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	ART4	Q93070	314 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	COX14	Q96I36	57 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	AGAP2	Q99490	1192 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	EPN3	Q9H201	632 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	KCTD5	Q9NXV2	234 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	MOSPD1	Q9UJG1	213 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	TUBD1	Q9UJT1	453 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	PILRA	Q9UKJ1	303 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	PHTF1	Q9UMS5	762 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	PCDHB11	Q9Y5F2	797 aa		11.12	□□□□□ -0.63
PTPN7-204	ENST00000462815	ZFC3H1	O60293	1989 aa	Known RBP	11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815		A0A1W2PQ67	120 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815		A6NCN8	305 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	MPST	P25325	297 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	HSPA9	P38646	679 aa	Known RBP	11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	ZNF135	P52742	658 aa	Predicted RBP	11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	POLE2	P56282	527 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	MAX	P61244	160 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	MYL5	Q02045	173 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	PTS	Q03393	145 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	UBXN1	Q04323	297 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	KCNAB2	Q13303	367 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	NFKBIB	Q15653	356 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	PYCR3	Q53H96	274 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	TMEM164	Q5U3C3	297 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	TXNRD3NB	Q6F5E7	133 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	TMEM71	Q6P5X7	295 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	BORA	Q6PGQ7	559 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	TIPARP	Q7Z3E1	657 aa	Known RBP	11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	ZNF571	Q7Z3V5	609 aa	Predicted RBP	11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	ARHGAP22	Q7Z5H3	698 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	POLN	Q7Z5Q5	900 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	TRIM74	Q86UV6	250 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	SFRP1	Q8N474	314 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	LZTR1	Q8N653	840 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	TEX26	Q8N6G2	289 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	AGBL5	Q8NDL9	886 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	SLC37A2	Q8TED4	501 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	CSPG4P5	Q96PW8	444 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	WDR24	Q96S15	920 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	ABCG8	Q9H221	673 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	MYO6	Q9UM54	1294 aa		11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	USP9Y	O00507	2555 aa	Predicted RBP	11.11	□□□□□ -0.63
PTPN7-204	ENST00000462815	TMCO5B	A8MYB1	307 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	DDX3X	O00571	662 aa	Known RBP eCLIP	11.1	□□□□□ -0.63	1e-6	■□□□□ 8.9
PTPN7-204	ENST00000462815	DAPK3	O43293	454 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	DUX1	O43812	170 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	PRPSAP2	O60256	369 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	RAD1	O60671	282 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	DNAJC6	O75061	913 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	TPM2	P07951	284 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	CTPS1	P17812	591 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	AMPD1	P23109	780 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	IL4R	P24394	825 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	PCK1	P35558	622 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	ACTR1B	P42025	376 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	ATP1A2	P50993	1020 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	ACTR1A	P61163	376 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	GPLD1	P80108	840 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	FOXK1	P85037	733 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	ZNF235	Q14590	738 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	RALGPS1	Q5JS13	557 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	LRRC66	Q68CR7	880 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	DENND2C	Q68D51	928 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	ANKS6	Q68DC2	871 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	ALG1L	Q6GMV1	187 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	RAET1G	Q6H3X3	334 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	ZNF765	Q7L2R6	523 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	NLRP8	Q86W28	1048 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	ZNF761	Q86XN6	746 aa	Predicted RBP	11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	CACNA2D3	Q8IZS8	1091 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	PDCD6IP	Q8WUM4	868 aa	Known RBP	11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	SCAMP4	Q969E2	229 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	RTP4	Q96DX8	246 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	SLC45A3	Q96JT2	553 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	OR2M4	Q96R27	311 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	DPYSL5	Q9BPU6	564 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	AKAP7	Q9P0M2	348 aa	Predicted RBP	11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	CD84	Q9UIB8	345 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	CNOT6	Q9ULM6	557 aa	Known RBP	11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	TMEM98	Q9Y2Y6	226 aa		11.1	□□□□□ -0.63
PTPN7-204	ENST00000462815	LOC101059948	A0A1B0GTJ6	334 aa		11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	LRRC53	A6NM62	1247 aa		11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	EFCAB7	A8K855	629 aa		11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	NKX2-8	O15522	239 aa		11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	DLGAP3	O95886	979 aa		11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	PRL	P01236	227 aa		11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	CYP2A6	P11509	494 aa	Predicted RBP	11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	GZMA	P12544	262 aa		11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	PRKCI	P41743	596 aa		11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	STC1	P52823	247 aa		11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	MC2R	Q01718	297 aa		11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	SLC25A11	Q02978	314 aa	Known RBP	11.09	□□□□□ -0.63
PTPN7-204	ENST00000462815	SKIDA1	Q1XH10	827 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms