RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SLC38A3Q99624 504 aa13.25□□□□□ -0.29
HMGB3-204ENST00000448905 MGME1Q9BQP7 344 aa13.25□□□□□ -0.29
HMGB3-204ENST00000448905 EFHD1Q9BUP0 239 aa13.25□□□□□ -0.29
HMGB3-204ENST00000448905 DDA1Q9BW61 102 aa13.25□□□□□ -0.29
HMGB3-204ENST00000448905 STN1Q9H668 368 aaKnown RBP13.25□□□□□ -0.29
HMGB3-204ENST00000448905 AIPL1Q9NZN9 384 aa13.25□□□□□ -0.29
HMGB3-204ENST00000448905 MYO1AQ9UBC5 1043 aa13.25□□□□□ -0.29
HMGB3-204ENST00000448905 DNPEPQ9ULA0 475 aa13.25□□□□□ -0.29
HMGB3-204ENST00000448905 PPIL1Q9Y3C6 166 aa13.25□□□□□ -0.29
HMGB3-204ENST00000448905 IGHV1OR21-1A0A087WYE8 117 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 LRRC53A6NM62 1247 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 B4E171 279 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 PPM1DO15297 605 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 ATMINO43313 823 aaPredicted RBP13.24□□□□□ -0.29
HMGB3-204ENST00000448905 PGLSO95336 258 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 ZNF30P17039 623 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 CR2P20023 1033 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 CA4P22748 312 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 AMPD1P23109 780 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 TSPAN7P41732 249 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 CYP4F2P78329 520 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 SRSF6Q13247 344 aaKnown RBP13.24□□□□□ -0.29
HMGB3-204ENST00000448905 DPYSL2Q16555 572 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 NKAIN2Q5VXU1 208 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 DOK6Q6PKX4 331 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 ADAMTSL4Q6UY14 1074 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 TECPR1Q7Z6L1 1165 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 FAM129CQ86XR2 697 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 GALNT13Q8IUC8 556 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 NRSN1Q8IZ57 195 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 CACNA2D3Q8IZS8 1091 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 NAGSQ8N159 534 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 PELI3Q8N2H9 469 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 ART4Q93070 314 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 KIAA1143Q96AT1 154 aaPredicted RBP13.24□□□□□ -0.29
HMGB3-204ENST00000448905 ZNF653Q96CK0 615 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 SCARF2Q96GP6 870 aaPredicted RBP13.24□□□□□ -0.29
HMGB3-204ENST00000448905 CATSPER2Q96P56 530 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 TEFMQ96QE5 360 aaKnown RBP13.24□□□□□ -0.29
HMGB3-204ENST00000448905 OR2M4Q96R27 311 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 MCCC1Q96RQ3 725 aaPredicted RBP13.24□□□□□ -0.29
HMGB3-204ENST00000448905 ZPBPQ9BS86 351 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 SYT11Q9BT88 431 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.24□□□□□ -0.29
HMGB3-204ENST00000448905 ZNHIT2Q9UHR6 403 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 TMEM98Q9Y2Y6 226 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 RP1P56715 2156 aa13.24□□□□□ -0.29
HMGB3-204ENST00000448905 NPIPB15A6NHN6 443 aaPredicted RBP13.23□□□□□ -0.29
HMGB3-204ENST00000448905 ASMTLO95671 621 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 PEX11BO96011 259 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 SLC2A4P14672 509 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 CTPS1P17812 591 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 MAP4P27816 1152 aaKnown RBP13.23□□□□□ -0.29
HMGB3-204ENST00000448905 UGT1A3P35503 534 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 CCR10P46092 362 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 TRAF2Q12933 501 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 ZNF765Q7L2R6 523 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 ZNF571Q7Z3V5 609 aaPredicted RBP13.23□□□□□ -0.29
HMGB3-204ENST00000448905 RAVER1Q8IY67 606 aaKnown RBP13.23□□□□□ -0.29
HMGB3-204ENST00000448905 NSMCE3Q96MG7 304 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 CSPG4P5Q96PW8 444 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.23□□□□□ -0.29
HMGB3-204ENST00000448905 POLR1EQ9GZS1 481 aaKnown RBP13.23□□□□□ -0.29
HMGB3-204ENST00000448905 ABCG8Q9H221 673 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 NT5MQ9NPB1 228 aa13.23□□□□□ -0.29
HMGB3-204ENST00000448905 RTN4Q9NQC3 1192 aaKnown RBP13.23□□□□□ -0.29
HMGB3-204ENST00000448905 TRBV23OR9-2A0A075B6M9 112 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 EFCAB7A8K855 629 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 ZNF891A8MT65 544 aaPredicted RBP13.22□□□□□ -0.29
HMGB3-204ENST00000448905 TERTO14746 1132 aaKnown RBP13.22□□□□□ -0.29
HMGB3-204ENST00000448905 DUX1O43812 170 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 RARAP10276 462 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 LHCGRP22888 699 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 MPSTP25325 297 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 PRKCIP41743 596 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 SSR1P43307 286 aaKnown RBP13.22□□□□□ -0.29
HMGB3-204ENST00000448905 FASLGP48023 281 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 MAXP61244 160 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 PTSQ03393 145 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 KRT81Q14533 505 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 HADHQ16836 314 aaKnown RBP13.22□□□□□ -0.29
HMGB3-204ENST00000448905 SMTNL2Q2TAL5 461 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 PYCR3Q53H96 274 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 TIGD7Q6NT04 549 aaPredicted RBP13.22□□□□□ -0.29
HMGB3-204ENST00000448905 WDR74Q6RFH5 385 aaPredicted RBP13.22□□□□□ -0.29
HMGB3-204ENST00000448905 CYP4V2Q6ZWL3 525 aaPredicted RBP13.22□□□□□ -0.29
HMGB3-204ENST00000448905 MARK2Q7KZI7 788 aaKnown RBP13.22□□□□□ -0.29
HMGB3-204ENST00000448905 APTXQ7Z2E3 356 aaKnown RBP13.22□□□□□ -0.29
HMGB3-204ENST00000448905 TP53INP2Q8IXH6 220 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 PGBD5Q8N414 524 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 AVL9Q8NBF6 648 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 TEKT4Q8WW24 435 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 PIH1D2Q8WWB5 315 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 PATE1Q8WXA2 126 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 SLC12A9Q9BXP2 914 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 TRIM7Q9C029 511 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 TRIM4Q9C037 500 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 ISCUQ9H1K1 167 aa13.22□□□□□ -0.29
HMGB3-204ENST00000448905 TRIT1Q9H3H1 467 aaKnown RBP13.22□□□□□ -0.29
HMGB3-204ENST00000448905 PDP2Q9P2J9 529 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms