RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 DSELQ8IZU8 1212 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 RNF175Q8N4F7 328 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 BHLHE22Q8NFJ8 381 aaPredicted RBP8.36□□□□□ -1.07
CD44-208ENST00000428726 SREK1Q8WXA9 508 aaKnown RBP8.36□□□□□ -1.07
CD44-208ENST00000428726 IMP4Q96G21 291 aaKnown RBP8.36□□□□□ -1.07
CD44-208ENST00000428726 SLC39A13Q96H72 371 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 SLC25A51Q9H1U9 297 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 FBXO44Q9H4M3 255 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 ZNF334Q9HCZ1 680 aaPredicted RBP8.36□□□□□ -1.07
CD44-208ENST00000428726 ENTPD7Q9NQZ7 604 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 IGSF5Q9NSI5 407 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 HACD3Q9P035 362 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 SLAMF8Q9P0V8 285 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 AGO1Q9UL18 857 aaKnown RBP8.36□□□□□ -1.07
CD44-208ENST00000428726 CCL26Q9Y258 94 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 LRCH1Q9Y2L9 728 aa8.36□□□□□ -1.07
CD44-208ENST00000428726 HEMK1Q9Y5R4 338 aaPredicted RBP8.36□□□□□ -1.07
CD44-208ENST00000428726 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 CLGNO14967 610 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 HDAC3O15379 428 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CCL16O15467 120 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 FGF10O15520 208 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 MAGEC1O60732 1142 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 NDUFS3O75489 264 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 TM7SF2O76062 418 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 BAIAP3O94812 1187 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 S1PR4O95977 384 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 SERPINF2P08697 491 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 ATXN1LP0C7T5 689 aaKnown RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 ACADSP16219 412 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 NCK1P16333 377 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 SYN1P17600 705 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 TYMPP19971 482 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 GSTT1P30711 240 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CDC16Q13042 620 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 ZNF177Q13360 481 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 SERINC3Q13530 473 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 EIF4EBP2Q13542 120 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 CCNIQ14094 377 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 EPGNQ6UW88 154 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 TSPAN33Q86UF1 283 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 KLHDC8BQ8IXV7 354 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CMTM8Q8IZV2 173 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CDYL2Q8N8U2 506 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CDC26Q8NHZ8 85 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 DNAJB14Q8TBM8 379 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 EEF1AKMT1Q8WVE0 214 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 TUBGCP3Q96CW5 907 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 PPP1R2P1Q96PQ5 205 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CORO1BQ9BR76 489 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 POLR1EQ9GZS1 481 aaKnown RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.35□□□□□ -1.07
CD44-208ENST00000428726 MRPL46Q9H2W6 279 aaKnown RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 SCUBE2Q9NQ36 999 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 TMEM161AQ9NX61 479 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 MBD1Q9UIS9 605 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 MID2Q9UJV3 735 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CDYLQ9Y232 598 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 RAI2Q9Y5P3 530 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CPQQ9Y646 472 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 BRWD1Q9NSI6 2320 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 GREB1Q4ZG55 1949 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 STC2O76061 302 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 KLHL2O95198 593 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CHRM1P11229 460 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 AOC1P19801 751 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 GABRR2P28476 465 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 MC4RP32245 332 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 RAP1GDS1P52306 607 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 IRX1P78414 480 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 SULT2A1Q06520 285 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CEACAM7Q14002 265 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 SF1Q15637 639 aaKnown RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 DNAL1Q4LDG9 190 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 C6orf163Q5TEZ5 329 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 LYSMD3Q7Z3D4 306 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 PIWIL4Q7Z3Z4 852 aaKnown RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 DNAJB7Q7Z6W7 309 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 GFM2Q969S9 779 aaKnown RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 ATP6V1E2Q96A05 226 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 PYCR2Q96C36 320 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 TMEM169Q96HH4 297 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CDKN2AIPNLQ96HQ2 116 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 C1orf21Q9H246 121 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 POLR3BQ9NW08 1133 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 DNAJC28Q9NX36 388 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 AURKCQ9UQB9 309 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 HEATR9A2RTY3 570 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 ZNF840PA6NDX5 716 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 MATN2O00339 956 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 ACSL4O60488 711 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 SEC24DO94855 1032 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 B3GALT4O96024 378 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CNPP09543 421 aaKnown RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 RHOQP17081 205 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 PAMP19021 973 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 HOXD9P28356 352 aaPredicted RBP8.35□□□□□ -1.07
CD44-208ENST00000428726 HOXC13P31276 330 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 CSKP41240 450 aa8.35□□□□□ -1.07
CD44-208ENST00000428726 RANBP1P43487 201 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms