RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 RBP1P09455 135 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 CNPP09543 421 aaKnown RBP10.67□□□□□ -0.7
CUX1-205ENST00000425244 ACVRL1P37023 503 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 RANBP1P43487 201 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 CDH13P55290 713 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 NME5P56597 212 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 PSME3P61289 254 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 RALGDSQ12967 914 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 FASTKQ14296 549 aaKnown RBP10.67□□□□□ -0.7
CUX1-205ENST00000425244 GALNT3Q14435 633 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 POLD3Q15054 466 aaPredicted RBP10.67□□□□□ -0.7
CUX1-205ENST00000425244 GEN1Q17RS7 908 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 COL13A1Q5TAT6 717 aaPredicted RBP10.67□□□□□ -0.7
CUX1-205ENST00000425244 OGFRL1Q5TC84 451 aaPredicted RBP10.67□□□□□ -0.7
CUX1-205ENST00000425244 TMEM207Q6UWW9 146 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 PGBD5Q8N414 524 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 SLC39A13Q96H72 371 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 C1orf74Q96LT6 269 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 TRAPPC9Q96Q05 1148 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 ARL5AQ9Y689 179 aa10.67□□□□□ -0.7
CUX1-205ENST00000425244 PSMD12O00232 456 aaPredicted RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 SCAMP3O14828 347 aaKnown RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 CASQ2O14958 399 aaPredicted RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 EFEMP2O95967 443 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 ADSLP30566 484 aaPredicted RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 KCNC1P48547 511 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 NDST2P52849 883 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 ERVFC1P60507 584 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 HTRA4P83105 476 aaPredicted RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 XIAPP98170 497 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 TWF1Q12792 350 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 PLD1Q13393 1074 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 CWF19L1Q69YN2 538 aaKnown RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 OR9I1Q8NGQ6 314 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 CCDC126Q96EE4 140 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 MAELQ96JY0 434 aaKnown RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 DNAJC1Q96KC8 554 aaKnown RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 KLHL32Q96NJ5 620 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 PCDHAC1Q9H158 963 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 ARNT2Q9HBZ2 717 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 VPS45Q9NRW7 570 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 MARCH2Q9P0N8 246 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 BCAP29Q9UHQ4 241 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 BACE2Q9Y5Z0 518 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 KIAA1671Q9BY89 1806 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 C15orf38-AP3S2A0A0A6YYH1 394 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 HIDE1A8MVS5 230 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 E7ENX8 843 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 S1PR4O95977 384 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 OR1E1P30953 314 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 TUFMP49411 452 aaKnown RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 ADGRE1Q14246 886 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 ZNF235Q14590 738 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 ACAP2Q15057 778 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 TLR1Q15399 786 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 ARPINQ7Z6K5 226 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 LILRA2Q8N149 483 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 CFAP52Q8N1V2 620 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 ATP6V0D2Q8N8Y2 350 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 FAR2Q96K12 515 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 PKP2Q99959 881 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 CENPKQ9BS16 269 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 FBRSL1Q9HCM7 1045 aaKnown RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 ATP13A1Q9HD20 1204 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 TLR8Q9NR97 1041 aaKnown RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 TMEM248Q9NWD8 314 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 AFF4Q9UHB7 1163 aaKnown RBP10.66□□□□□ -0.7
CUX1-205ENST00000425244 TRAF6Q9Y4K3 522 aa10.66□□□□□ -0.7
CUX1-205ENST00000425244 WASH4PA8MWX3 477 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 UBFD1O14562 309 aaKnown RBP10.65□□□□□ -0.7
CUX1-205ENST00000425244 SLC7A4O43246 635 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 TLR5O60602 858 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 BCAS2O75934 225 aaPredicted RBP10.65□□□□□ -0.7
CUX1-205ENST00000425244 CA3P07451 260 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 LINC00271P0C7V0 271 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 TPP2P29144 1249 aaPredicted RBP10.65□□□□□ -0.7
CUX1-205ENST00000425244 PMLP29590 882 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 CHN2P52757 468 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 ZNF683Q8IZ20 524 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 PELI3Q8N2H9 469 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 HERVK_113Q902F9 699 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 MYEOVQ96EZ4 313 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 CNBD2Q96M20 576 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 HERC2P3Q9BVR0 1158 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 TRIM4Q9C037 500 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 FAM192AQ9GZU8 254 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 MFSD1Q9H3U5 465 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.65□□□□□ -0.71e-6■■■■□ 23.3
CUX1-205ENST00000425244 YIPF1Q9Y548 306 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 ACTL7AQ9Y615 435 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 TGM5O43548 720 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 PEX1O43933 1283 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 SIX3O95343 332 aaPredicted RBP10.65□□□□□ -0.7
CUX1-205ENST00000425244 GOT2P00505 430 aaKnown RBP10.65□□□□□ -0.7
CUX1-205ENST00000425244 ATXN1LP0C7T5 689 aaKnown RBP10.65□□□□□ -0.7
CUX1-205ENST00000425244 PRSS56P0CW18 603 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 NRG1Q02297 640 aaPredicted RBP10.65□□□□□ -0.7
CUX1-205ENST00000425244 SMARCB1Q12824 385 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 SQLEQ14534 574 aa10.65□□□□□ -0.7
CUX1-205ENST00000425244 SHHQ15465 462 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms