RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 PGM2L1Q6PCE3 622 aa20.07■□□□□ 0.8
USP39-204ENST00000409766 LILRA6Q6PI73 481 aa20.07■□□□□ 0.8
USP39-204ENST00000409766 OTOP2Q7RTS6 562 aa20.07■□□□□ 0.8
USP39-204ENST00000409766 RYBPQ8N488 228 aaPredicted RBP20.07■□□□□ 0.8
USP39-204ENST00000409766 DDI1Q8WTU0 396 aa20.07■□□□□ 0.8
USP39-204ENST00000409766 ARMC5Q96C12 935 aa20.07■□□□□ 0.8
USP39-204ENST00000409766 CATSPER2Q96P56 530 aa20.07■□□□□ 0.8
USP39-204ENST00000409766 ERVK-6Q9BXR3 956 aa20.07■□□□□ 0.8
USP39-204ENST00000409766 TFB2MQ9H5Q4 396 aaKnown RBP20.07■□□□□ 0.8
USP39-204ENST00000409766 SYTL2Q9HCH5 934 aa20.07■□□□□ 0.8
USP39-204ENST00000409766 HACD3Q9P035 362 aa20.07■□□□□ 0.8
USP39-204ENST00000409766 MCM8Q9UJA3 840 aa20.07■□□□□ 0.8
USP39-204ENST00000409766 PCDHB9Q9Y5E1 797 aa20.07■□□□□ 0.8
USP39-204ENST00000409766 UBFD1O14562 309 aaKnown RBP20.06■□□□□ 0.8
USP39-204ENST00000409766 STX7O15400 261 aaKnown RBP20.06■□□□□ 0.8
USP39-204ENST00000409766 SMIM24O75264 130 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 MTHFD2P13995 350 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 UNC50Q53HI1 259 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 C1orf146Q5VVC0 180 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 PAQR3Q6TCH7 311 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 CPXM2Q8N436 756 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 CEP70Q8NHQ1 597 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 SHKBP1Q8TBC3 707 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 ATOH8Q96SQ7 321 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 C2orf49Q9BVC5 232 aaPredicted RBP20.06■□□□□ 0.8
USP39-204ENST00000409766 CCDC68Q9H2F9 335 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 BPIFA1Q9NP55 256 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 CFAP97Q9P2B7 532 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 STX18Q9P2W9 335 aaKnown RBP20.06■□□□□ 0.8
USP39-204ENST00000409766 STOML1Q9UBI4 398 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 G3BP2Q9UN86 482 aaKnown RBP20.06■□□□□ 0.8
USP39-204ENST00000409766 FAM50BQ9Y247 325 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 VPS9D1Q9Y2B5 631 aa20.06■□□□□ 0.8
USP39-204ENST00000409766 A0A0U1RQS6 177 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 NRG2O14511 850 aaPredicted RBP20.05■□□□□ 0.8
USP39-204ENST00000409766 CCNT2O60583 730 aaKnown RBP20.05■□□□□ 0.8
USP39-204ENST00000409766 TBX10O75333 385 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 SUPT7LO94864 414 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 LRG1P02750 347 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 GCKP35557 465 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 TTPAP49638 278 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 AP1S1P61966 158 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 TLDC1Q6P9B6 456 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 BBS7Q8IWZ6 715 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 DEFB107AQ8IZN7 70 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 TMEM199Q8N511 208 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 RP9Q8TA86 221 aaKnown RBP20.05■□□□□ 0.8
USP39-204ENST00000409766 DERL2Q9GZP9 239 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 MEAF6Q9HAF1 191 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 ZNF510Q9Y2H8 683 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 LCHNA4D1U4 455 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 SKAP2O75563 359 aaPredicted RBP20.05■□□□□ 0.8
USP39-204ENST00000409766 C1QTNF8P60827 252 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 PTPRNQ16849 979 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 PPM1LQ5SGD2 360 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 MPP7Q5T2T1 576 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 RETSATQ6NUM9 610 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 SNX32Q86XE0 403 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 PELI3Q8N2H9 469 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 AFAP1L2Q8N4X5 818 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 KIAA1191Q96A73 305 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 ZBTB26Q9HCK0 441 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 IL17CQ9P0M4 197 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 CDH22Q9UJ99 828 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 FIS1Q9Y3D6 152 aa20.05■□□□□ 0.8
USP39-204ENST00000409766 COPG1Q9Y678 874 aaKnown RBP20.05■□□□□ 0.8
USP39-204ENST00000409766 OAS3Q9Y6K5 1087 aaKnown RBP20.05■□□□□ 0.8
USP39-204ENST00000409766 UBXN8O00124 270 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 SMAD6O43541 496 aaKnown RBP20.04■□□□□ 0.8
USP39-204ENST00000409766 PRAMEF12O95522 483 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 EPHB1P54762 984 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 SLC34A1Q06495 639 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 MYLK4Q86YV6 388 aaPredicted RBP20.04■□□□□ 0.8
USP39-204ENST00000409766 DNAJC5GQ8N7S2 189 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 PTGR2Q8N8N7 351 aaPredicted RBP20.04■□□□□ 0.8
USP39-204ENST00000409766 PIH1D2Q8WWB5 315 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 EXT2Q93063 718 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 ACDQ96AP0 544 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 EID2BQ96D98 161 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 ANKRD27Q96NW4 1050 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 TM6SF2Q9BZW4 377 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 MAGEE1Q9HCI5 957 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 CLEC4EQ9ULY5 219 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 SH3BP1Q9Y3L3 701 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 ZNF711Q9Y462 761 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 TRAF6Q9Y4K3 522 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 LRRC42Q9Y546 428 aa20.04■□□□□ 0.8
USP39-204ENST00000409766 A0A1W2PRU2 124 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 OR1I1O60431 355 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 PGLSO95336 258 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 CXCL14O95715 111 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 C8AP07357 584 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 INHBCP55103 352 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 XIAPP98170 497 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 CYLC2Q14093 348 aaPredicted RBP20.03■□□□□ 0.8
USP39-204ENST00000409766 CCDC6Q16204 474 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 MPPE1Q53F39 396 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 ZRANB3Q5FWF4 1079 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 CCDC149Q6ZUS6 474 aa20.03■□□□□ 0.8
USP39-204ENST00000409766 CHSY3Q70JA7 882 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms