RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TBC1D3GQ6DHY5 549 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 CENPPQ6IPU0 288 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 TBC1D3CQ6IPX1 549 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 NAPEPLDQ6IQ20 393 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 CCDC144NLQ6NUI1 221 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 C17orf99Q6UX52 265 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 MFSD7Q6UXD7 560 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 CLEC9AQ6UXN8 241 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 CFAP77Q6ZQR2 320 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 C15orf39Q6ZRI6 1047 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 DHX40Q8IX18 779 aaKnown RBP4.16□□□□□ -1.74
HMGB1-204ENST00000399489 TBC1D3Q8IZP1 549 aaPredicted RBP4.16□□□□□ -1.74
HMGB1-204ENST00000399489 CCDC148Q8NFR7 591 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 DBF4BQ8NFT6 615 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 GTF3C6Q969F1 213 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 CFAP36Q96G28 342 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 AGAP3Q96P47 875 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 ZNF350Q9GZX5 532 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 SYTL2Q9HCH5 934 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 TUFT1Q9NNX1 390 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 TMEM74BQ9NUR3 256 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 INTS13Q9NVM9 706 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 P4HTMQ9NXG6 502 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 PSD3Q9NYI0 1048 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 ZMAT5Q9UDW3 170 aaKnown RBP4.16□□□□□ -1.74
HMGB1-204ENST00000399489 FAM205AQ6ZU69 1335 aa4.16□□□□□ -1.74
HMGB1-204ENST00000399489 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 A0A087WV48 116 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 ARPC4-TTLL3A0A0A6YYG9 625 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 M0QX08 132 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 SLC30A4O14863 429 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 CTAGE5O15320 804 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 HS6ST1O60243 411 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 NEMFO60524 1076 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 PTBP3O95758 552 aaKnown RBP4.15□□□□□ -1.74
HMGB1-204ENST00000399489 CHRM4P08173 479 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 CYP3A4P08684 503 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 TSPY4P0CV99 314 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 TSPY10P0CW01 314 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 ADRA2CP18825 462 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 CHRM3P20309 590 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 TCEA1P23193 301 aaKnown RBP4.15□□□□□ -1.74
HMGB1-204ENST00000399489 MDH1P40925 334 aaKnown RBP4.15□□□□□ -1.74
HMGB1-204ENST00000399489 KCNJ1P48048 391 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 GATMP50440 423 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 F2RL1P55085 397 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 TAS2R50P59544 299 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 CXADRP78310 365 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 PMP22Q01453 160 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 PRKCZQ05513 592 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 RIPK1Q13546 671 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 GAMTQ14353 236 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 MXD4Q14582 209 aaPredicted RBP4.15□□□□□ -1.74
HMGB1-204ENST00000399489 ZNF169Q14929 603 aaPredicted RBP4.15□□□□□ -1.74
HMGB1-204ENST00000399489 PPP1R7Q15435 360 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 STXBP5Q5T5C0 1151 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 TSSK4Q6SA08 328 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 C1orf186Q6ZWK4 172 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 ARMCX2Q7L311 632 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 ARMC9Q7Z3E5 817 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 CDH26Q8IXH8 852 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 ELMOD2Q8IZ81 293 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 ABRAQ8N0Z2 381 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 BANPQ8N9N5 519 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 OR6C4Q8NGE1 309 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 KIAA1524Q8TCG1 905 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 TMEM171Q8WVE6 324 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 GIMAP5Q96F15 307 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 FBXL20Q96IG2 436 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 OR2A14Q96R47 310 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 NEU1Q99519 415 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 EIF3CQ99613 913 aaKnown RBP4.15□□□□□ -1.74
HMGB1-204ENST00000399489 NPAS1Q99742 590 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 RWDD1Q9H446 243 aaPredicted RBP4.15□□□□□ -1.74
HMGB1-204ENST00000399489 GSTO2Q9H4Y5 243 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 CRLF2Q9HC73 371 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 SLC22A11Q9NSA0 550 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 DNAJC17Q9NVM6 304 aaKnown RBP4.15□□□□□ -1.74
HMGB1-204ENST00000399489 IL1RAPL1Q9NZN1 696 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 SLC17A6Q9P2U8 582 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 SPASTQ9UBP0 616 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 KCNE5Q9UJ90 142 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 ITM2BQ9Y287 266 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 SNX9Q9Y5X1 595 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 PNPLA7Q6ZV29 1317 aa4.15□□□□□ -1.74
HMGB1-204ENST00000399489 ZNF644Q9H582 1327 aaPredicted RBP4.15□□□□□ -1.74
HMGB1-204ENST00000399489 COL11A2P13942 1736 aaPredicted RBP4.15□□□□□ -1.74
HMGB1-204ENST00000399489 EDDM13A0A1B0GTR0 161 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 IFNL4K9M1U5 179 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 CXCL11O14625 94 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 RASGRF2O14827 1237 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 SPAG6O75602 509 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 AKR7A3O95154 331 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 PRAMEF12O95522 483 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 DIRAS3O95661 229 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 CSF1RP07333 972 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 ABHD2P08910 425 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 FMO4P31512 558 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 UQCRC1P31930 480 aa4.15□□□□□ -1.75
HMGB1-204ENST00000399489 HSPA1LP34931 641 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms