RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 FPGSQ05932 587 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 STXBP2Q15833 593 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 STXBP5Q5T5C0 1151 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 ARHGAP17Q68EM7 881 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 SULT1C3Q6IMI6 304 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF605Q86T29 641 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 RNF139Q8WU17 664 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 MZB1Q8WU39 189 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 STON2Q8WXE9 905 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 OTULINQ96BN8 352 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF778Q96MU6 729 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 TMEM74Q96NL1 305 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 AFF4Q9UHB7 1163 aaKnown RBP9.3□□□□□ -0.92
COL28A1-201ENST00000399429 ZNF222Q9UK12 451 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 DUSP12Q9UNI6 340 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 SPO11Q9Y5K1 396 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 TSPOAP1O95153 1857 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 HACD1B0YJ81 288 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 C9IYK1 514 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 NDUFS3O75489 264 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 RPS6KA4O75676 772 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 ANXA9O76027 345 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 IGFBP5P24593 272 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 DCKP27707 260 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 MAP2K4P45985 399 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 ALDH7A1P49419 539 aaKnown RBP9.3□□□□□ -0.92
COL28A1-201ENST00000399429 PRKG2Q13237 762 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 FSCN1Q16658 493 aaKnown RBP9.3□□□□□ -0.92
COL28A1-201ENST00000399429 CYP20A1Q6UW02 462 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 DENND6AQ8IWF6 608 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 FBXO39Q8N4B4 442 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 TTC39CQ8N584 583 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 ANKFN1Q8N957 763 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 SLC47A1Q96FL8 570 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 ACTR8Q9H981 624 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 KLQ9UEF7 1012 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 AAR2Q9Y312 384 aaKnown RBP9.3□□□□□ -0.92
COL28A1-201ENST00000399429 PCDHB3Q9Y5E6 796 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 UMPSP11172 480 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 HNF4AP41235 474 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 GSK3BP49841 420 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 PPP5CP53041 499 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 ARSFP54793 590 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 LRRC74AQ0VAA2 488 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 TIMM50Q3ZCQ8 353 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 INTS11Q5TA45 600 aaKnown RBP9.3□□□□□ -0.92
COL28A1-201ENST00000399429 ANKS6Q68DC2 871 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 HDDC2Q7Z4H3 204 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 PROSER1Q86XN7 944 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 KRT73Q86Y46 540 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 OR2T12Q8NG77 320 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 METTL6Q8TCB7 284 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 BLOC1S5Q8TDH9 187 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 MROQ9BYG7 248 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 RGS18Q9NS28 235 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 ACTR3BQ9P1U1 418 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 POLLQ9UGP5 575 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 MAGEL2Q9UJ55 1249 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 FBXO5Q9UKT4 447 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 B3GNT3Q9Y2A9 372 aa9.3□□□□□ -0.92
COL28A1-201ENST00000399429 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 FAM240BA0A1B0GVZ2 78 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 PSIP1O75475 530 aaKnown RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 GCATO75600 419 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 SLC22A3O75751 556 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 VNN1O95497 513 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 CSF2P04141 144 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 MTPNP58546 118 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 ENPEPQ07075 957 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 C6orf141Q5SZD1 244 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 RFPL4BQ6ZWI9 263 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 LZTR1Q8N653 840 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 HEXDCQ8WVB3 486 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 LRRC58Q96CX6 371 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 REXO5Q96IC2 774 aaKnown RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 CSPG4P5Q96PW8 444 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 KATNAL1Q9BW62 490 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 CPNE5Q9HCH3 593 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 CCNB1IP1Q9NPC3 277 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 IKZF3Q9UKT9 509 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 HES2Q9Y543 173 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 PEX16Q9Y5Y5 336 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 A0A087X1B8 175 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 DYNC1LI2O43237 492 aaPredicted RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 RASAL1O95294 804 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 BMP2P12643 396 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 IDUAP35475 653 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 ATXN1P54253 815 aaKnown RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 RAB25P57735 213 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 MXD1Q05195 221 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 ABI1Q8IZP0 508 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 LGI2Q8N0V4 545 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 DEFB106AQ8N104 65 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 PYROXD2Q8N2H3 581 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 NDNFQ8TB73 568 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 SYTL5Q8TDW5 730 aaPredicted RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 JPH3Q8WXH2 748 aaPredicted RBP9.29□□□□□ -0.92
COL28A1-201ENST00000399429 LGALS12Q96DT0 336 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 FIZ1Q96SL8 496 aa9.29□□□□□ -0.92
COL28A1-201ENST00000399429 HBEGFQ99075 208 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms