RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 HECTD3Q5T447 861 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 PLPPR4Q7Z2D5 763 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 RAB43Q86YS6 212 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 PGAM4Q8N0Y7 254 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 CNTD1Q8N815 330 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 OR2T34Q8NGX1 318 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 OR2T3Q8NH03 318 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 JOSD2Q8TAC2 188 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 ATP13A3Q9H7F0 1226 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 SAMD4AQ9UPU9 718 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 RPTORQ8N122 1335 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 SUV39H1O43463 412 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 FTH1P02794 183 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 LYNP07948 512 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 NR2F1P10589 423 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 PTPRAP18433 802 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 SCNN1GP51170 649 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 ARSHQ5FYA8 562 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 BRMS1LQ5PSV4 323 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 SHQ1Q6PI26 577 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 ADGRD1Q6QNK2 874 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 FRMD7Q6ZUT3 714 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 CXXC5Q7LFL8 322 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 FAM220AQ7Z4H9 259 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 OR4L1Q8NH43 312 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 HELQQ8TDG4 1101 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 HTRA1Q92743 480 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 BTBD9Q96Q07 612 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 TMEM168Q9H0V1 697 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 WDR55Q9H6Y2 383 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 MCUBQ9NWR8 336 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 THG1LQ9NWX6 298 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 TULP2O00295 520 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 DHX15O43143 795 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 PAPSS1O43252 624 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 NDUFB5O43674 189 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 UGT2B11O75310 529 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 PRDX6P30041 224 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 HPS6Q86YV9 775 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 TLCD1Q96CP7 247 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 LINGO1Q96FE5 620 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 ADAM2Q99965 735 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 IRF2BPLQ9H1B7 796 aa10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 NOL11Q9H8H0 719 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-203ENST00000396595 A8MUI8 341 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 A8MX80 341 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 OR10H3O60404 316 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 SERPINB7O75635 380 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 NUDT14O95848 222 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 BMP7P18075 431 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ADSLP30566 484 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ADCYAP1R1P41586 468 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 CDH13P55290 713 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 MTAPQ13126 283 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 GALNT18Q6P9A2 607 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 FBXL19Q6PCT2 694 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 SLCO6A1Q86UG4 719 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 DSELQ8IZU8 1212 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 CPSF7Q8N684 471 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 S100A13Q99584 98 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ZDHHC6Q9H6R6 413 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 GNEQ9Y223 722 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 IRGMA1A4Y4 181 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 OR14I1A6ND48 311 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 PPM1BO75688 479 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 HOXA10P31260 410 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ARHGDIBP52566 201 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 MAZP56270 477 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 FUT2Q10981 343 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 GK5Q6ZS86 529 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 TDRPQ86YL5 185 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 PDPRQ8NCN5 879 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 AKT1S1Q96B36 256 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 GLOD4Q9HC38 313 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 FAM198AQ9UFP1 575 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ARHGAP23Q9P227 1491 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 MGRN1O60291 552 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 TRMUO75648 421 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 THEGLP0DJG4 465 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 SP100P23497 879 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 DEFA5Q01523 94 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 CBFBQ13951 182 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 SLC25A52Q3SY17 297 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 TNFAIP8L3Q5GJ75 292 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 FNBP1LQ5T0N5 605 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 DOK6Q6PKX4 331 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ZNF655Q8N720 491 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 TDRD1Q9BXT4 1180 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 DENND2DQ9H6A0 471 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 AGLP35573 1532 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 BCL9O00512 1426 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ATRNO75882 1429 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 PLOD2O00469 737 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 SIN3BO75182 1162 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 ITGB5P18084 799 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 NELFEP18615 380 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 EPHX2P34913 555 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 CCR4P51679 360 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 PGDP52209 483 aa10.24□□□□□ -0.77
LIMCH1-203ENST00000396595 CYP4F2P78329 520 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms