RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 MTHFD1P11586 935 aaKnown RBP12.68□□□□□ -0.38
SHMT1-205ENST00000395684 ODC1P11926 461 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 HGFP14210 728 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 FDXRP22570 491 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 ENTPD1P49961 510 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 DIO3P55073 304 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 ATP6AP1Q15904 470 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 MARC1Q5VT66 337 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 KANK2Q63ZY3 851 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 LRRC49Q8IUZ0 686 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 CPNE9Q8IYJ1 553 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 LZICQ8WZA0 190 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 TUBGCP3Q96CW5 907 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 CENPNQ96H22 339 aaPredicted RBP12.68□□□□□ -0.38
SHMT1-205ENST00000395684 PTBP2Q9UKA9 531 aaKnown RBP12.68□□□□□ -0.38
SHMT1-205ENST00000395684 BTRCQ9Y297 605 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 PCDHA9Q9Y5H5 950 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 CCL15-CCL14A0A0B4J2E2 113 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 TNFRSF10BO14763 440 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 SEMA3AQ14563 771 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 CCL15Q16663 113 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 FBXO48Q5FWF7 155 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 PRMT9Q6P2P2 845 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 ELMSAN1Q6PJG2 1045 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 CD300LGQ6UXG3 332 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 BRI3BPQ8WY22 251 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 DCUN1D5Q9BTE7 237 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 TRIM62Q9BVG3 475 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 NPLQ9BXD5 320 aaPredicted RBP12.68□□□□□ -0.38
SHMT1-205ENST00000395684 AGO3Q9H9G7 860 aaKnown RBP12.68□□□□□ -0.38
SHMT1-205ENST00000395684 FLRT1Q9NZU1 646 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 UXTQ9UBK9 157 aaPredicted RBP12.68□□□□□ -0.38
SHMT1-205ENST00000395684 POLG2Q9UHN1 485 aa12.68□□□□□ -0.38
SHMT1-205ENST00000395684 FOXD2O60548 495 aaPredicted RBP12.67□□□□□ -0.38
SHMT1-205ENST00000395684 MATN4O95460 622 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 ATXN1LP0C7T5 689 aaKnown RBP12.67□□□□□ -0.38
SHMT1-205ENST00000395684 RPL9P32969 192 aaKnown RBP12.67□□□□□ -0.38
SHMT1-205ENST00000395684 SOX11P35716 441 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 ESRRGP62508 458 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 ECT2LQ008S8 904 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 BNIP2Q12982 314 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 RABL3Q5HYI8 236 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 BLOC1S3Q6QNY0 202 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 LYSMD3Q7Z3D4 306 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 SPRED1Q7Z699 444 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 IFNEQ86WN2 208 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 UMODL1-AS1Q8N2C9 162 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 TRPV3Q8NET8 790 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 DNAJB14Q8TBM8 379 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 FNDC8Q8TC99 324 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 CYGBQ8WWM9 190 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 PSMG2Q969U7 264 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 TEX37Q96LM6 180 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 C9orf16Q9BUW7 83 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 OSBPL6Q9BZF3 934 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 TRIM15Q9C019 465 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 TTC3P53804 2025 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 A0A1W2PQH9 124 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 WASH4PA8MWX3 477 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 INPP4BO15327 924 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 CNTN5O94779 1100 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 ATE1O95260 518 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 RASAL1O95294 804 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 GOT2P00505 430 aaKnown RBP12.67□□□□□ -0.38
SHMT1-205ENST00000395684 POMCP01189 267 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 ZNF865P0CJ78 1059 aaPredicted RBP12.67□□□□□ -0.38
SHMT1-205ENST00000395684 SLC2A3P11169 496 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 GFAPP14136 432 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 ZNF37AP17032 561 aaPredicted RBP12.67□□□□□ -0.38
SHMT1-205ENST00000395684 LBPP18428 481 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 NUP107P57740 925 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 PMS2P3Q13401 168 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 CYP51A1Q16850 503 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 ALFQ53S48 1182 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 OFCC1Q8IZS5 231 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 BBS5Q8N3I7 341 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 PGBD5Q8N414 524 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 TNIP2Q8NFZ5 429 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 ARRDC2Q8TBH0 407 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 GFM2Q969S9 779 aaKnown RBP12.67□□□□□ -0.38
SHMT1-205ENST00000395684 TMEM125Q96AQ2 219 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 VPS33AQ96AX1 596 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 ATOH8Q96SQ7 321 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 ARL5AQ9Y689 179 aa12.67□□□□□ -0.38
SHMT1-205ENST00000395684 DICER1Q9UPY3 1922 aaKnown RBP12.67□□□□□ -0.38
SHMT1-205ENST00000395684 ASPDHA6ND91 283 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 EI24O14681 340 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 CLASP2O75122 1294 aaKnown RBP12.66□□□□□ -0.38
SHMT1-205ENST00000395684 NCK1P16333 377 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 VARSP26640 1264 aaKnown RBP12.66□□□□□ -0.38
SHMT1-205ENST00000395684 GRIK1P39086 918 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 RPS6KA2Q15349 733 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 METTL23Q86XA0 190 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 DCP1BQ8IZD4 617 aaKnown RBP12.66□□□□□ -0.38
SHMT1-205ENST00000395684 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.66□□□□□ -0.38
SHMT1-205ENST00000395684 ASB2Q96Q27 587 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 SOX17Q9H6I2 414 aaPredicted RBP12.66□□□□□ -0.38
SHMT1-205ENST00000395684 CXorf21Q9HAI6 301 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 GID8Q9NWU2 228 aa12.66□□□□□ -0.38
SHMT1-205ENST00000395684 FAF1Q9UNN5 650 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms