RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 ALS2CLQ60I27 953 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 RANBP10Q6VN20 620 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 RD3Q7Z3Z2 195 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 TMC3Q7Z5M5 1100 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 TRIM74Q86UV6 250 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 HID1Q8IV36 788 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 KLHDC8BQ8IXV7 354 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 TTC30BQ8N4P2 665 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 EID2Q8N6I1 236 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 PRELID2Q8N945 189 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 GPR26Q8NDV2 337 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 BAHD1Q8TBE0 780 aaPredicted RBP13.32□□□□□ -0.28
VPS28-202ENST00000377348 BLOC1S5Q8TDH9 187 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 PTCD2Q8WV60 388 aaKnown RBP13.32□□□□□ -0.28
VPS28-202ENST00000377348 MAIP1Q8WWC4 291 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 OR1E3Q8WZA6 343 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 PDXPQ96GD0 296 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 WDR92Q96MX6 357 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 AP1M1Q9BXS5 423 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 TEX101Q9BY14 249 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 FGF22Q9HCT0 170 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 MRPL40Q9NQ50 206 aaKnown RBP13.32□□□□□ -0.28
VPS28-202ENST00000377348 KCTD5Q9NXV2 234 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 PKD2L2Q9NZM6 624 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 KLQ9UEF7 1012 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 APOBEC3BQ9UH17 382 aaKnown RBP13.32□□□□□ -0.28
VPS28-202ENST00000377348 SNX12Q9UMY4 172 aa13.32□□□□□ -0.28
VPS28-202ENST00000377348 TDRD6O60522 2096 aaKnown RBP13.32□□□□□ -0.28
VPS28-202ENST00000377348 INPP4BO15327 924 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 FFAR2O15552 330 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 CELA2BP08218 269 aaPredicted RBP13.31□□□□□ -0.28
VPS28-202ENST00000377348 MYCLP1P12525 358 aaPredicted RBP13.31□□□□□ -0.28
VPS28-202ENST00000377348 CEACAM1P13688 526 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 GRK6P43250 576 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 SRP54P61011 504 aaKnown RBP13.31□□□□□ -0.28
VPS28-202ENST00000377348 PPARDQ03181 441 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 TRIP6Q15654 476 aaKnown RBP13.31□□□□□ -0.28
VPS28-202ENST00000377348 KCTD11Q693B1 232 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 DENND5AQ6IQ26 1287 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 DRICH1Q6PGQ1 229 aaPredicted RBP13.31□□□□□ -0.28
VPS28-202ENST00000377348 DOK6Q6PKX4 331 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 ZNF765Q7L2R6 523 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 NRSN1Q8IZ57 195 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 PDCD7Q8N8D1 485 aaKnown RBP13.31□□□□□ -0.28
VPS28-202ENST00000377348 CCDC89Q8N998 374 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 ZNF548Q8NEK5 533 aaPredicted RBP13.31□□□□□ -0.28
VPS28-202ENST00000377348 OR56A4Q8NGH8 313 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 LMX1AQ8TE12 382 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 TBL1YQ9BQ87 522 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 FAM83DQ9H4H8 585 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 SUDS3Q9H7L9 328 aaPredicted RBP13.31□□□□□ -0.28
VPS28-202ENST00000377348 ETNK1Q9HBU6 452 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 PHPT1Q9NRX4 125 aaPredicted RBP13.31□□□□□ -0.28
VPS28-202ENST00000377348 PIH1D1Q9NWS0 290 aaKnown RBP13.31□□□□□ -0.28
VPS28-202ENST00000377348 MOSPD1Q9UJG1 213 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 ZKSCAN5Q9Y2L8 839 aa13.31□□□□□ -0.28
VPS28-202ENST00000377348 PCNX2A6NKB5 2137 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 FADS2P1A8MWK0 482 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 H3BM21 787 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 TRIM38O00635 465 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 FANCGO15287 622 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 HOXC4P09017 264 aaPredicted RBP13.3□□□□□ -0.28
VPS28-202ENST00000377348 GIMD1P0DJR0 217 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 BPIP17213 487 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 POLD2P49005 469 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 HK3P52790 923 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 SIM1P81133 766 aaPredicted RBP13.3□□□□□ -0.28
VPS28-202ENST00000377348 PTPRCAPQ14761 206 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 INAVAQ3KP66 663 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 PRRT3Q5FWE3 981 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 HENMT1Q5T8I9 393 aaKnown RBP13.3□□□□□ -0.28
VPS28-202ENST00000377348 TTC27Q6P3X3 843 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 ADAMTSL4Q6UY14 1074 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 GLT6D1Q7Z4J2 308 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 NLRP8Q86W28 1048 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 LRRC61Q9BV99 259 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 SPATA16Q9BXB7 569 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 CLPBQ9H078 707 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 TRABDQ9H4I3 376 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 TTC7AQ9ULT0 858 aaPredicted RBP13.3□□□□□ -0.28
VPS28-202ENST00000377348 DRG1Q9Y295 367 aaKnown RBP13.3□□□□□ -0.28
VPS28-202ENST00000377348 TMEM98Q9Y2Y6 226 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 KCTD3Q9Y597 815 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 ARL5AQ9Y689 179 aa13.3□□□□□ -0.28
VPS28-202ENST00000377348 RGSL1A5PLK6 1076 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 PGRMC1O00264 195 aaKnown RBP13.29□□□□□ -0.28
VPS28-202ENST00000377348 AQP9O43315 295 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 SIGLEC6O43699 453 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 RASGRP1O95267 797 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 AP2A1O95782 977 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 FUCA1P04066 466 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 CEACAM5P06731 702 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 TPH1P17752 444 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 KELP23276 732 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 TEAD1P28347 426 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 RPL22P35268 128 aaKnown RBP13.29□□□□□ -0.28
VPS28-202ENST00000377348 ACTN2P35609 894 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 HMGCLP35914 325 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 DNAJC3Q13217 504 aa13.29□□□□□ -0.28
VPS28-202ENST00000377348 MSLNQ13421 630 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms