RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ZC3H7AQ8IWR0 971 aaKnown RBP21.12■□□□□ 0.97
UPF3A-202ENST00000375299 PAPD5Q8NDF8 572 aaKnown RBP21.12■□□□□ 0.97
UPF3A-202ENST00000375299 TRUB1Q8WWH5 349 aaKnown RBP21.12■□□□□ 0.97
UPF3A-202ENST00000375299 RNF34Q969K3 372 aa21.12■□□□□ 0.97
UPF3A-202ENST00000375299 EMID1Q96A84 441 aaPredicted RBP21.12■□□□□ 0.97
UPF3A-202ENST00000375299 TRIM54Q9BYV2 358 aa21.12■□□□□ 0.97
UPF3A-202ENST00000375299 TRIM8Q9BZR9 551 aa21.12■□□□□ 0.97
UPF3A-202ENST00000375299 ANAPC2Q9UJX6 822 aa21.12■□□□□ 0.97
UPF3A-202ENST00000375299 SLC30A1Q9Y6M5 507 aa21.12■□□□□ 0.97
UPF3A-202ENST00000375299 FGF4P08620 206 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 MATN1P21941 496 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 GSTM4Q03013 218 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 PLCL1Q15111 1095 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 ZNF792Q3KQV3 632 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 ZNF773Q6PK81 442 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 PTRH1Q86Y79 214 aaKnown RBP21.11■□□□□ 0.97
UPF3A-202ENST00000375299 TBC1D21Q8IYX1 336 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 PNPLA1Q8N8W4 532 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 DQX1Q8TE96 717 aaKnown RBP21.11■□□□□ 0.97
UPF3A-202ENST00000375299 ASB2Q96Q27 587 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 ALG2Q9H553 416 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 VTA1Q9NP79 307 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 SDR39U1Q9NRG7 319 aaPredicted RBP21.11■□□□□ 0.97
UPF3A-202ENST00000375299 TMEM30AQ9NV96 361 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 J3QRK9 145 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 AZIN1O14977 448 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 SULT1C4O75897 302 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 CDK14O94921 469 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 ESRRBO95718 433 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 POLR2IP36954 125 aaKnown RBP21.11■□□□□ 0.97
UPF3A-202ENST00000375299 SLC26A3P40879 764 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 KCNC4Q03721 635 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 NR1D2Q14995 579 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 GEN1Q17RS7 908 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 NIPAL1Q6NVV3 410 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 FBXL8Q96CD0 374 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 TSPAN18Q96SJ8 248 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 ZFYVE28Q9HCC9 887 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 MID1IP1Q9NPA3 183 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 RBM22Q9NW64 420 aaKnown RBP eCLIP21.11■□□□□ 0.972e-10■■■■■ 44.4
UPF3A-202ENST00000375299 ZNF639Q9UID6 485 aa21.11■□□□□ 0.97
UPF3A-202ENST00000375299 NYNRINQ9P2P1 1898 aaKnown RBP21.11■□□□□ 0.97
UPF3A-202ENST00000375299 LDLRP01130 860 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 UMPSP11172 480 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 JUNBP17275 347 aaPredicted RBP21.1■□□□□ 0.97
UPF3A-202ENST00000375299 LBPP18428 481 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 CDKN2DP55273 166 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 IFNEQ86WN2 208 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 DCP1BQ8IZD4 617 aaKnown RBP21.1■□□□□ 0.97
UPF3A-202ENST00000375299 SLC15A4Q8N697 577 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 EXT2Q93063 718 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 PTERQ96BW5 349 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 MTG1Q9BT17 334 aaPredicted RBP21.1■□□□□ 0.97
UPF3A-202ENST00000375299 TDRD1Q9BXT4 1180 aaKnown RBP21.1■□□□□ 0.97
UPF3A-202ENST00000375299 SLC39A8Q9C0K1 460 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 SLC52A3Q9NQ40 469 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 PIN4Q9Y237 131 aaKnown RBP21.1■□□□□ 0.97
UPF3A-202ENST00000375299 RBM47A0AV96 593 aaKnown RBP21.1■□□□□ 0.97
UPF3A-202ENST00000375299 TTC36A6NLP5 189 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 H0YAE9 185 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 MAPK10P53779 464 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 FOXA1P55317 472 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 PCSK7Q16549 785 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 KANK2Q63ZY3 851 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 BLOC1S3Q6QNY0 202 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 GALNT7Q86SF2 657 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 CILP2Q8IUL8 1156 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 PDPRQ8NCN5 879 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 CDCA5Q96FF9 252 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 CYP2S1Q96SQ9 504 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 SLC30A3Q99726 388 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 KCTD14Q9BQ13 255 aaPredicted RBP21.1■□□□□ 0.97
UPF3A-202ENST00000375299 C1orf50Q9BV19 199 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 SIK2Q9H0K1 926 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 CORINQ9Y5Q5 1042 aa21.1■□□□□ 0.97
UPF3A-202ENST00000375299 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.09■□□□□ 0.97
UPF3A-202ENST00000375299 BCL10O95999 233 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 MBL2P11226 248 aaPredicted RBP21.09■□□□□ 0.97
UPF3A-202ENST00000375299 DARSP14868 501 aaKnown RBP21.09■□□□□ 0.97
UPF3A-202ENST00000375299 NCK1P16333 377 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 NFYCQ13952 458 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 RPS6KA2Q15349 733 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 ZBTB46Q86UZ6 589 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 PTGR2Q8N8N7 351 aaPredicted RBP21.09■□□□□ 0.97
UPF3A-202ENST00000375299 OSCP1Q8WVF1 389 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 TUBGCP3Q96CW5 907 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 PCED1BQ96HM7 432 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 FANCEQ9HB96 536 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 HHLA1C9JL84 531 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 CFAP99D6REC4 459 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 PPP6CO00743 305 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 SEC14L2O76054 403 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 APLP1P51693 650 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 WNT3AP56704 352 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 LIPEQ05469 1076 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 PIM3Q86V86 326 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 LEMD2Q8NC56 503 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 DNAJB14Q8TBM8 379 aa21.09■□□□□ 0.97
UPF3A-202ENST00000375299 RPL10LQ96L21 214 aaKnown RBP21.09■□□□□ 0.97
UPF3A-202ENST00000375299 NEURL2Q9BR09 285 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms