RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 PCDHA9Q9Y5H5 950 aa16.36■□□□□ 0.21
SDC4-201ENST00000372733 RFC2P35250 354 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 CD86P42081 329 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 PGFP49763 221 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 DIO3P55073 304 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 CDC42EP1Q00587 391 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 NFKB2Q00653 900 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 ITKQ08881 620 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 RPS6KA2Q15349 733 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 OR4D1Q15615 310 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 PFKFB4Q16877 469 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 C14orf80Q86SX3 495 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 TANKQ92844 425 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 TMEM125Q96AQ2 219 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 DCPSQ96C86 337 aaKnown RBP16.35■□□□□ 0.21
SDC4-201ENST00000372733 KLHL5Q96PQ7 755 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 CATSPERBQ9H7T0 1116 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 MBLAC1A4D2B0 266 aaPredicted RBP16.35■□□□□ 0.21
SDC4-201ENST00000372733 TREHO43280 583 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 IGLV3-25P01717 112 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 GPIP06744 558 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 CD1DP15813 335 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 UGT1A1P22309 533 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 UGT1A4P22310 534 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 UGT1A3P35503 534 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 UGT1A5P35504 534 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 RPS9P46781 194 aaKnown RBP16.35■□□□□ 0.21
SDC4-201ENST00000372733 ECT2LQ008S8 904 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 CBX3Q13185 183 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 IHHQ14623 411 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 FUT11Q495W5 492 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 PYCR3Q53H96 274 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 GPC2Q8N158 579 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 ZNF420Q8TAQ5 688 aaPredicted RBP16.35■□□□□ 0.21
SDC4-201ENST00000372733 BORCS5Q969J3 196 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 CD320Q9NPF0 282 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 SDR39U1Q9NRG7 319 aaPredicted RBP16.35■□□□□ 0.21
SDC4-201ENST00000372733 GID8Q9NWU2 228 aa16.35■□□□□ 0.21
SDC4-201ENST00000372733 TCRBV5S2A0A599 114 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 ASPDHA6ND91 283 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 FGF10O15520 208 aaPredicted RBP16.34■□□□□ 0.21
SDC4-201ENST00000372733 HOXC13P31276 330 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 POLR2IP36954 125 aaKnown RBP16.34■□□□□ 0.21
SDC4-201ENST00000372733 NFYCQ13952 458 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 KANK2Q63ZY3 851 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 OGFOD2Q6N063 350 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 TIGD7Q6NT04 549 aaPredicted RBP16.34■□□□□ 0.21
SDC4-201ENST00000372733 TEX37Q96LM6 180 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 TMEM74Q96NL1 305 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 PAAF1Q9BRP4 392 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 ALG2Q9H553 416 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 CDH9Q9ULB4 789 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 DOLKQ9UPQ8 538 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 B4GAT1O43505 415 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 BAIAP3O94812 1187 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 ZBTB11O95625 1053 aaPredicted RBP16.34■□□□□ 0.21
SDC4-201ENST00000372733 LBPP18428 481 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 CD97P48960 835 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 DSC2Q02487 901 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 LIPEQ05469 1076 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 PAN2Q504Q3 1202 aaKnown RBP16.34■□□□□ 0.21
SDC4-201ENST00000372733 ZNF549Q6P9A3 640 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 GPRC5AQ8NFJ5 357 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 VPS50Q96JG6 964 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 PPP1R2P1Q96PQ5 205 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 TSPAN18Q96SJ8 248 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 GAD1Q99259 594 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 SEPHS2Q99611 448 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 SLC30A3Q99726 388 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 KCTD14Q9BQ13 255 aaPredicted RBP16.34■□□□□ 0.21
SDC4-201ENST00000372733 RTP3Q9BQQ7 232 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 SLC25A51Q9H1U9 297 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 PIF1Q9H611 641 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 SLC52A3Q9NQ40 469 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 PLXNB2O15031 1838 aa16.34■□□□□ 0.21
SDC4-201ENST00000372733 ZFC3H1O60293 1989 aaKnown RBP16.34■□□□□ 0.21
SDC4-201ENST00000372733 CASTOR2A6NHX0 329 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 DYNC1LI2O43237 492 aaPredicted RBP16.33■□□□□ 0.21
SDC4-201ENST00000372733 KPNA6O60684 536 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 MATN4O95460 622 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 INHBBP09529 407 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 CCR1P32246 355 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 CYP2C18P33260 490 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 CASP2P42575 452 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 C21orf59P57076 290 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 PTPRCAPQ14761 206 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 ZNF829Q3KNS6 432 aaPredicted RBP16.33■□□□□ 0.21
SDC4-201ENST00000372733 SLC44A4Q53GD3 710 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 BLOC1S3Q6QNY0 202 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 TBPL2Q6SJ96 375 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 DCP1BQ8IZD4 617 aaKnown RBP16.33■□□□□ 0.21
SDC4-201ENST00000372733 TMEM86AQ8N2M4 240 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 GOLM1Q8NBJ4 401 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 PABPC5Q96DU9 382 aaKnown RBP16.33■□□□□ 0.21
SDC4-201ENST00000372733 PLEKHA8Q96JA3 519 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 ARNT2Q9HBZ2 717 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 CSNK1G1Q9HCP0 422 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 ATP13A1Q9HD20 1204 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 TMLHEQ9NVH6 421 aa16.33■□□□□ 0.21
SDC4-201ENST00000372733 IFT80Q9P2H3 777 aaPredicted RBP16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms