RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PKP3Q9Y446 797 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 NUMBLQ9Y6R0 609 aa13.75□□□□□ -0.21
PTPRF-202ENST00000372405 TCF20Q9UGU0 1960 aaKnown RBP13.75□□□□□ -0.21
PTPRF-202ENST00000372405 PRRT4C9JH25 899 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 SERPINE1P05121 402 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 CCDC166P0CW27 439 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 RALBP11234 206 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 LHCGRP22888 699 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 SUOXP51687 545 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 HSF5Q4G112 596 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-202ENST00000372405 RNF187Q5TA31 235 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-202ENST00000372405 CRTC1Q6UUV9 634 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 ZYG11AQ6WRX3 759 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 TBC1D1Q86TI0 1168 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-202ENST00000372405 SFTPA1Q8IWL2 248 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 PLPP6Q8IY26 295 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 GRIN3AQ8TCU5 1115 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 MOCOSQ96EN8 888 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 CCDC97Q96F63 343 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-202ENST00000372405 SCRN2Q96FV2 425 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 TSPAN17Q96FV3 270 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 ZNF641Q96N77 438 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-202ENST00000372405 MCCC1Q96RQ3 725 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-202ENST00000372405 TCF12Q99081 682 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 PLA2G2FQ9BZM2 168 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 ECT2Q9H8V3 914 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 THAP1Q9NVV9 213 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 OXSMQ9NWU1 459 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 OBP2AQ9NY56 170 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 CLEC1BQ9P126 229 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 CDH7Q9ULB5 785 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 RRP15Q9Y3B9 282 aaKnown RBP13.74□□□□□ -0.21
PTPRF-202ENST00000372405 WASF2Q9Y6W5 498 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 PLXNB3Q9ULL4 1909 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 UBA6A0AVT1 1052 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-202ENST00000372405 NFATC1O95644 943 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 APOA4P06727 396 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 CTSLP07711 333 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 TROVE2P10155 538 aaKnown RBP eCLIP13.74□□□□□ -0.21
PTPRF-202ENST00000372405 BPIP17213 487 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 FMO4P31512 558 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 SLC1A6P48664 564 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 DLX2Q07687 328 aaPredicted RBP13.74□□□□□ -0.21
PTPRF-202ENST00000372405 ZRANB3Q5FWF4 1079 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 TECRLQ5HYJ1 363 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 LRRC73Q5JTD7 316 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 FAM151BQ6UXP7 276 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 ZNF366Q8N895 744 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 PPP1R14CQ8TAE6 165 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 TTC8Q8TAM2 541 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 SCG3Q8WXD2 468 aaKnown RBP13.74□□□□□ -0.21
PTPRF-202ENST00000372405 PPP2R3CQ969Q6 453 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 FAM136AQ96C01 138 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 SCYL1Q96KG9 808 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 MYADMQ96S97 322 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 TRIM55Q9BYV6 548 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 IL26Q9NPH9 171 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 ACSS2Q9NR19 701 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 USH1CQ9Y6N9 552 aa13.74□□□□□ -0.21
PTPRF-202ENST00000372405 DENND4AQ7Z401 1863 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 HGSO14964 777 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-202ENST00000372405 DLX3O60479 287 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 NDUFS3O75489 264 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 LTA4HP09960 611 aaKnown RBP13.73□□□□□ -0.21
PTPRF-202ENST00000372405 MYL2P10916 166 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 VASPP50552 380 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-202ENST00000372405 ADAM15Q13444 863 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 TSNAXIP1Q2TAA8 658 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 CTSL3PQ5NE16 218 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 GDPD4Q6W3E5 623 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 CCDC121Q6ZUS5 278 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 TDHQ8IZJ6 230 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 PAF1Q8N7H5 531 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 RDH11Q8TC12 318 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 ZNF398Q8TD17 642 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 TSNARE1Q96NA8 513 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 KLHL32Q96NJ5 620 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 GATA5Q9BWX5 397 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-202ENST00000372405 S1PR5Q9H228 398 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 MRPL46Q9H2W6 279 aaKnown RBP13.73□□□□□ -0.21
PTPRF-202ENST00000372405 KDM4CQ9H3R0 1056 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 GALPQ9UBC7 116 aa13.73□□□□□ -0.21
PTPRF-202ENST00000372405 MARCOQ9UEW3 520 aaPredicted RBP13.73□□□□□ -0.21
PTPRF-202ENST00000372405 A0A0G2JND7 137 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 TRIM13O60858 407 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 LEFTY1O75610 366 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 SRP72O76094 671 aaKnown RBP13.72□□□□□ -0.21
PTPRF-202ENST00000372405 KIAA0754O94854 1291 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 SRPRAP08240 638 aaKnown RBP13.72□□□□□ -0.21
PTPRF-202ENST00000372405 GRK2P25098 689 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 KCNC1P48547 511 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 TTPAP49638 278 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 CACNG1Q06432 222 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 RAD51Q06609 339 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 FCHO2Q0JRZ9 810 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 LACTB2Q53H82 288 aaPredicted RBP13.72□□□□□ -0.21
PTPRF-202ENST00000372405 LRRC66Q68CR7 880 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 RFLNAQ6ZTI6 216 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 TPRG1Q6ZUI0 275 aa13.72□□□□□ -0.21
PTPRF-202ENST00000372405 PHTF2Q8N3S3 785 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms