RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CCDC160A6NGH7 325 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 A8MVJ9 347 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 GFRA2O00451 464 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 AREL1O15033 823 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 USP1O94782 785 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 KCNK5O95279 499 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 OTCP00480 354 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 PTHP01270 115 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 IL2RAP01589 272 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 HLA-DQA2P01906 255 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 C8GP07360 202 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 CHMLP26374 656 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 EEF1DP29692 281 aaKnown RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 SPRP35270 261 aaPredicted RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 SLC16A1P53985 500 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 FANCCQ00597 558 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 GRB14Q14449 540 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 MCM6Q14566 821 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 RCN1Q15293 331 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 ANGPT1Q15389 498 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 C3orf38Q5JPI3 329 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 CAPN13Q6MZZ7 669 aaPredicted RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 ABHD13Q7L211 337 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 VSIG10LQ86VR7 867 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 PRSS58Q8IYP2 241 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 CCNYL1Q8N7R7 359 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 PJA1Q8NG27 643 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 TMEM171Q8WVE6 324 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 ELMO3Q96BJ8 720 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 BTN2A3PQ96KV6 586 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 TMEM8AQ9HCN3 771 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 POLE3Q9NRF9 147 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 HPF1Q9NWY4 346 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 TRHDEQ9UKU6 1024 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 FRMPD1Q5SYB0 1578 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 A0A1W2PRU2 124 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 POTEMA6NI47 508 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 SMIM23A6NLE4 172 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 C4orf47A7E2U8 309 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 FAM155AB1AL88 458 aaPredicted RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 PER1O15534 1290 aaPredicted RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 PRODHO43272 600 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 MAP3K6O95382 1288 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 OGNP20774 298 aaKnown RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 RPS7P62081 194 aaKnown RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 NFKB2Q00653 900 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 CBFBQ13951 182 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 PON2Q15165 354 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 TLR1Q15399 786 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 LSM12Q3MHD2 195 aaKnown RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 ZMAT1Q5H9K5 638 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 SH3D19Q5HYK7 790 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 POTEGQ6S5H5 508 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 ZNF572Q7Z3I7 529 aaPredicted RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 C1orf210Q8IVY1 113 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 PAPD5Q8NDF8 572 aaKnown RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 NDNFQ8TB73 568 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 ZUFSPQ96AP4 578 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 DNAJA3Q96EY1 480 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 MED8Q96G25 268 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 GBA3Q9H227 469 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 TMEM134Q9H6X4 195 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 MOV10Q9HCE1 1003 aaKnown RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 TM7SF3Q9NS93 570 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 LRFN1Q9P244 771 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 TSR3Q9UJK0 312 aaKnown RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 GMPPBQ9Y5P6 360 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 INSL5Q9Y5Q6 135 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 SNX14Q9Y5W7 946 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 ATXN2Q99700 1313 aaKnown RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 A0A1B0GUH1 482 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 DPPA5A6NC42 116 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 XKRYO14609 159 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 AKAP3O75969 853 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 HLA-DRAP01903 254 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 QDPRP09417 244 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 FAM163BP0C2L3 166 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 PRKAR1AP10644 381 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 ANPEPP15144 967 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 FPR1P21462 350 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 BMI1P35226 326 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 SOX6P35712 828 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 ZNF41P51814 821 aaPredicted RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 CACNA2D1P54289 1103 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 GPC5P78333 572 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 SNRNP35Q16560 246 aaKnown RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 PRRT3Q5FWE3 981 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 ACSM2BQ68CK6 577 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 BRAT1Q6PJG6 821 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 LVRNQ6Q4G3 990 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 ADGRD2Q7Z7M1 963 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 CILP2Q8IUL8 1156 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 ATP6V1C2Q8NEY4 427 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 GCDHQ92947 438 aaPredicted RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 MAGOHBQ96A72 148 aaKnown RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 LMF2Q9BU23 707 aaKnown RBP4.09□□□□□ -1.75
USH2A-202ENST00000366942 SARGQ9BW04 601 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 CCSER1Q9C0I3 900 aa4.09□□□□□ -1.75
USH2A-202ENST00000366942 UCKL1Q9NWZ5 548 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms