RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 TRIM38O00635 465 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 F11P03951 625 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 SNRPB2P08579 225 aaKnown RBP20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 VCLP18206 1134 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 GRAMD1BQ3KR37 738 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 MMEL1Q495T6 779 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 REP15Q6BDI9 236 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 AFTPHQ6ULP2 937 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 RAB44Q7Z6P3 723 aaPredicted RBP20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 SNX31Q8N9S9 440 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 PHC3Q8NDX5 983 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 ZBED2Q9BTP6 218 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 E7ENX8 843 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 CBX4O00257 560 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 RHOBTB1O94844 696 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 SEC24AO95486 1093 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 ZCCHC18P0CG32 403 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 TCN1P20061 433 aaPredicted RBP20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 ATXN3P54252 364 aaPredicted RBP20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 PAOXQ6QHF9 649 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 KIAA1191Q96A73 305 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 UNC93B1Q9H1C4 597 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 SYTL2Q9HCH5 934 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 FAM50BQ9Y247 325 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 PCDHGC4Q9Y5F7 938 aa20.77■□□□□ 0.92
CCDC88B-203ENST00000359902 C2orf81A6NN90 581 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 MED21Q13503 144 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 USP41Q3LFD5 358 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 CHST9Q7L1S5 443 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 DLG3Q92796 817 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 WBP2Q969T9 261 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 NSUN5Q96P11 429 aaKnown RBP20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 TCF12Q99081 682 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 VN1R3Q9BXE9 311 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 DERL2Q9GZP9 239 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 RNF38Q9H0F5 515 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 AKTIPQ9H8T0 292 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 MID1IP1Q9NPA3 183 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 TAS2R13Q9NYV9 303 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 TBC1D30Q9Y2I9 924 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 PITPNM1O00562 1244 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 TSPAN3O60637 253 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 NDUFS3O75489 264 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 SRP72O76094 671 aaKnown RBP20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 ALDOCP09972 364 aaKnown RBP20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 CDKN1CP49918 316 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 ATP4BP51164 291 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 ADGRF1Q5T601 910 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 RNF220Q5VTB9 566 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 LRRC43Q8N309 656 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 OR9I1Q8NGQ6 314 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 KLHL32Q96NJ5 620 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 SLC25A23Q9BV35 468 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 CWH43Q9H720 699 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 PDP2Q9P2J9 529 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 RIMS3Q9UJD0 308 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 IKZF3Q9UKT9 509 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 DTNAQ9Y4J8 743 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 ASB3Q9Y575 518 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 BACE2Q9Y5Z0 518 aa20.76■□□□□ 0.91
CCDC88B-203ENST00000359902 A0A1B0GVM2 712 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 LCHNA4D1U4 455 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 MAP3K13O43283 966 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 KERAO60938 352 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 GFAPP14136 432 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 CES1P23141 567 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 ALDH7A1P49419 539 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 ACADVLP49748 655 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 FOXA1P55317 472 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 ADGRE1Q14246 886 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 RNF219Q5W0B1 726 aaPredicted RBP20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 C16orf59Q7L2K0 433 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 ICA1LQ8NDH6 482 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 LPCAT1Q8NF37 534 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 STAG3L4Q8TBR4 150 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 ASB9Q96DX5 294 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 BTBD9Q96Q07 612 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 YIPF3Q9GZM5 350 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 RAI2Q9Y5P3 530 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 CAPN8A6NHC0 703 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 AZIN1O14977 448 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 TRIM25Q14258 630 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 CXorf57Q6NSI4 855 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 TMEM126BQ8IUX1 230 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 FUNDC1Q8IVP5 155 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 LILRA2Q8N149 483 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 SCLYQ96I15 445 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 LRGUKQ96M69 825 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 CCDC68Q9H2F9 335 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 COPS7BQ9H9Q2 264 aaPredicted RBP20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 TRPM5Q9NZQ8 1165 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 GALPQ9UBC7 116 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 SUCOQ9UBS9 1254 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 PTGDR2Q9Y5Y4 395 aa20.75■□□□□ 0.91
CCDC88B-203ENST00000359902 ANKRD36A6QL64 1941 aa20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 PRSS51A0A1B0GVH4 220 aa20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 TRIM24O15164 1050 aa20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 NRP2O60462 931 aa20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 CLASP2O75122 1294 aaKnown RBP20.74■□□□□ 0.91
CCDC88B-203ENST00000359902 IRF1P10914 325 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms