RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 PCGF5Q86SE9 256 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 CPNE8Q86YQ8 564 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 CDKL3Q8IVW4 592 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 DEFB106AQ8N104 65 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 KRT222Q8N1A0 295 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 NUP93Q8N1F7 819 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 ZNF513Q8N8E2 541 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 CASKIN2Q8WXE0 1202 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 SNF8Q96H20 258 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 ZNF419Q96HQ0 510 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 FCRL2Q96LA5 508 aaPredicted RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 RNF157Q96PX1 679 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 PEBP4Q96S96 227 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 SNRNP25Q9BV90 132 aaKnown RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 TTLL2Q9BWV7 592 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 MAK16Q9BXY0 300 aaKnown RBP7.07□□□□□ -1.28
VPS13A-201ENST00000355766 ULBP1Q9BZM6 244 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 PPCSQ9HAB8 311 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 CD248Q9HCU0 757 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 TM7SF3Q9NS93 570 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 ZDHHC18Q9NUE0 388 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 TMLHEQ9NVH6 421 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 GFOD1Q9NXC2 390 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 OGFRQ9NZT2 677 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 PCDHGB2Q9Y5G2 931 aa7.07□□□□□ -1.28
VPS13A-201ENST00000355766 UNC79Q9P2D8 2635 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 ADAMTS9Q9P2N4 1935 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 A0A1W2PQF6 199 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 TCRBV7S2A1N4TA0A589 114 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 YJEFN3A6XGL0 299 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 MEI4A8MW99 385 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 E7ENQ6 273 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 PLK4O00444 970 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 CLDN5O00501 218 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 FGF10O15520 208 aaPredicted RBP7.06□□□□□ -1.28
VPS13A-201ENST00000355766 RRP8O43159 456 aaKnown RBP7.06□□□□□ -1.28
VPS13A-201ENST00000355766 IRAK2O43187 625 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 CST8O60676 142 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 BEST1O76090 585 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 FYNP06241 537 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 TCF4P15884 667 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 PFKLP17858 780 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 HDCP19113 662 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 BDNFP23560 247 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 IL4RP24394 825 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 L1CAMP32004 1257 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 SERPINB6P35237 376 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 ADRA1BP35368 520 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 RNASE9P60153 205 aaKnown RBP7.06□□□□□ -1.28
VPS13A-201ENST00000355766 ERVFRD-1P60508 538 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 YWHAGP61981 247 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS13A-201ENST00000355766 BNC1Q01954 994 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 DEUP1Q05D60 604 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 HLTFQ14527 1009 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS13A-201ENST00000355766 MORF4L2Q15014 288 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 TAF5Q15542 800 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 C15orf59Q2T9L4 293 aaPredicted RBP7.06□□□□□ -1.28
VPS13A-201ENST00000355766 SMTNL2Q2TAL5 461 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 P3H1Q32P28 736 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 HSP90B2PQ58FF3 399 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 ANKRD20A8PQ5CZ79 823 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 SNX30Q5VWJ9 437 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 TXNRD3NBQ6F5E7 133 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 IL27RAQ6UWB1 636 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 DBX2Q6ZNG2 339 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 DENND5BQ6ZUT9 1274 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 PHLDB2Q86SQ0 1253 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 LRRC49Q8IUZ0 686 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 TMEM151BQ8IW70 566 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 ZCCHC9Q8N567 271 aaKnown RBP7.06□□□□□ -1.28
VPS13A-201ENST00000355766 ACTL9Q8TC94 416 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 P3H4Q92791 437 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 ART4Q93070 314 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 RELTQ969Z4 430 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 SLC6A18Q96N87 628 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 OLFM3Q96PB7 478 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 PPP1R2P1Q96PQ5 205 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 CSPG4P5Q96PW8 444 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 HAPLN3Q96S86 360 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 KCNK16Q96T55 309 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 CALN1Q9BXU9 219 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 TXLNGYQ9BZA5 131 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 MKRN2Q9H000 416 aaKnown RBP7.06□□□□□ -1.28
VPS13A-201ENST00000355766 OSBPL2Q9H1P3 480 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 GAREM1Q9H706 876 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 FAM204AQ9H8W3 233 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 CD93Q9NPY3 652 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 TMEM30AQ9NV96 361 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 ARHGEF38Q9NXL2 777 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 GRHL1Q9NZI5 618 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 FZD10Q9ULW2 581 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 NFU1Q9UMS0 254 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 BTBD3Q9Y2F9 522 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 GPR55Q9Y2T6 319 aaPredicted RBP7.06□□□□□ -1.28
VPS13A-201ENST00000355766 PTPRBP23467 1997 aa7.06□□□□□ -1.28
VPS13A-201ENST00000355766 ATG2BQ96BY7 2078 aa7.05□□□□□ -1.28
VPS13A-201ENST00000355766 GOLGA6BA6NDN3 693 aa7.05□□□□□ -1.28
VPS13A-201ENST00000355766 M0QYT0 321 aa7.05□□□□□ -1.28
VPS13A-201ENST00000355766 SLC9A3R1O14745 358 aaPredicted RBP7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms