RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 CCDC68Q9H2F9 335 aa17.31■□□□□ 0.36
CLDN4-201ENST00000340958 PSD3Q9NYI0 1048 aa17.31■□□□□ 0.36
CLDN4-201ENST00000340958 APPL1Q9UKG1 709 aa17.31■□□□□ 0.36
CLDN4-201ENST00000340958 PPIL1Q9Y3C6 166 aa17.31■□□□□ 0.36
CLDN4-201ENST00000340958 A0A096LPK6 155 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 UBA6A0AVT1 1052 aaPredicted RBP17.3■□□□□ 0.36
CLDN4-201ENST00000340958 DCXO43602 365 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 SYNCRIPO60506 623 aaKnown RBP17.3■□□□□ 0.36
CLDN4-201ENST00000340958 S1PR4O95977 384 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 STMN1P16949 149 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 TIE1P35590 1138 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 SPAM1P38567 509 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 TNFRSF4P43489 277 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 POLD2P49005 469 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 CLCN5P51795 746 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 ILF2Q12905 390 aaKnown RBP17.3■□□□□ 0.36
CLDN4-201ENST00000340958 PDE1CQ14123 709 aaPredicted RBP17.3■□□□□ 0.36
CLDN4-201ENST00000340958 ZNF789Q5FWF6 425 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 PPM1JQ5JR12 505 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 SDE2Q6IQ49 451 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 FBXL19Q6PCT2 694 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 SH2D5Q6ZV89 423 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 SLC44A3Q8N4M1 653 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 PNPLA1Q8N8W4 532 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 TMIEQ8NEW7 156 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 HCAR2Q8TDS4 363 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 EID2BQ96D98 161 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 FAM111AQ96PZ2 611 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 MCCC1Q96RQ3 725 aaPredicted RBP17.3■□□□□ 0.36
CLDN4-201ENST00000340958 ACOX2Q99424 681 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 EPHX3Q9H6B9 360 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 SLC17A7Q9P2U7 560 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 DCDC2Q9UHG0 476 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 VPS9D1Q9Y2B5 631 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 STON1Q9Y6Q2 735 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 PIAS3Q9Y6X2 628 aa17.3■□□□□ 0.36
CLDN4-201ENST00000340958 C1QTNF3-AMACRE9PGA6 284 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 PRAMEF1O95521 474 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 PRSS56P0CW18 603 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 TIMP2P16035 220 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 VIPR1P32241 457 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 CTHP32929 405 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 CRHR1P34998 444 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 PPARGP37231 505 aaPredicted RBP17.29■□□□□ 0.36
CLDN4-201ENST00000340958 CCNFP41002 786 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 TTPAP49638 278 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 STC1P52823 247 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 POU4F1Q01851 419 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 CACNG1Q06432 222 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 RNF187Q5TA31 235 aaPredicted RBP17.29■□□□□ 0.36
CLDN4-201ENST00000340958 GALNT7Q86SF2 657 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 MMAAQ8IVH4 418 aaKnown RBP17.29■□□□□ 0.36
CLDN4-201ENST00000340958 VOPP1Q96AW1 172 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 TSPAN17Q96FV3 270 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 MCMBPQ9BTE3 642 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 C12orf65Q9H3J6 166 aaKnown RBP17.29■□□□□ 0.36
CLDN4-201ENST00000340958 PCDH12Q9NPG4 1184 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 HEBP1Q9NRV9 189 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 INTS10Q9NVR2 710 aaKnown RBP17.29■□□□□ 0.36
CLDN4-201ENST00000340958 DKK3Q9UBP4 350 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 GRID1Q9ULK0 1009 aa17.29■□□□□ 0.36
CLDN4-201ENST00000340958 GLYATL1P3A0A0U1RQE8 302 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 H7C0S8 307 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 NPC1O15118 1278 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 SHOX2O60902 331 aaPredicted RBP17.28■□□□□ 0.36
CLDN4-201ENST00000340958 RNASEH1O60930 286 aaKnown RBP17.28■□□□□ 0.36
CLDN4-201ENST00000340958 GLRA3O75311 464 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 SRP72O76094 671 aaKnown RBP17.28■□□□□ 0.36
CLDN4-201ENST00000340958 ITGALP20701 1170 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 PSMA3P25788 255 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 CRABP2P29373 138 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 NEK3P51956 506 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 RAB10P61026 200 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 PTSQ03393 145 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 GRSF1Q12849 480 aaKnown RBP eCLIP17.28■□□□□ 0.366e-6■■□□□ 12.3
CLDN4-201ENST00000340958 PEX6Q13608 980 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 SEMA3AQ14563 771 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 PON2Q15165 354 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 CDKN3Q16667 212 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 RALGPS2Q86X27 583 aaPredicted RBP17.28■□□□□ 0.36
CLDN4-201ENST00000340958 ACVR1CQ8NER5 493 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 TCF12Q99081 682 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 ASB8Q9H765 288 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 C8orf33Q9H7E9 229 aaPredicted RBP17.28■□□□□ 0.36
CLDN4-201ENST00000340958 PKD2L2Q9NZM6 624 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 PPM1HQ9ULR3 514 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 STARD13Q9Y3M8 1113 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 TECTAO75443 2155 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 KIAA1549LQ6ZVL6 1849 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 COL4A3Q01955 1670 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 TSPAN11A1L157 253 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 WDR91A4D1P6 747 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 ERICH4A6NGS2 130 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 PHGDHO43175 533 aaKnown RBP17.28■□□□□ 0.36
CLDN4-201ENST00000340958 C2P06681 752 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 CHRM1P11229 460 aaPredicted RBP17.28■□□□□ 0.36
CLDN4-201ENST00000340958 ZNF30P17039 623 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 BPIP17213 487 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 LHCGRP22888 699 aa17.28■□□□□ 0.36
CLDN4-201ENST00000340958 FOXN2P32314 431 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms