RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RIPK3Q9Y572 518 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 NPEPPSL1A6NEC2 478 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 FYNP06241 537 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ITGA3P26006 1051 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 MAPK9P45984 424 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 GSTM5P46439 218 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 NDUFV1P49821 464 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 BCL2L1Q07817 233 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 SPIRE1Q08AE8 756 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 NOMO1Q15155 1222 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 IL23RQ5VWK5 629 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 RETSATQ6NUM9 610 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 CXCL17Q6UXB2 119 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 KRT73Q86Y46 540 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 DENND1CQ8IV53 801 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 FAM20CQ8IXL6 584 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 OR52B2Q96RD2 323 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ZDHHC6Q9H6R6 413 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 TLR8Q9NR97 1041 aaKnown RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 INTS7Q9NVH2 962 aaKnown RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 ARHGAP28Q9P2N2 729 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 GSTK1Q9Y2Q3 226 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ADAMTSL3P82987 1691 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 CASKO14936 926 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 SCAMP1O15126 338 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ALDH1A2O94788 518 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 OR5F1O95221 314 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 CHRNB2P17787 502 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 NMBRP28336 390 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 BUD31P41223 144 aaPredicted RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 RPS9P46781 194 aaKnown RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 CA9Q16790 459 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 TRIM40Q6P9F5 258 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 PRR23CQ6ZRP0 262 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 PTCHD4Q6ZW05 846 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 MTSS1LQ765P7 747 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 CDK20Q8IZL9 346 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 FSTL5Q8N475 847 aaPredicted RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 LZTR1Q8N653 840 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 OR8H1Q8NGG4 311 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 CANT1Q8WVQ1 401 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 PIH1D2Q8WWB5 315 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 BTBD9Q96Q07 612 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 RHOBTB2Q9BYZ6 727 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 SOX17Q9H6I2 414 aaPredicted RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 XPNPEP1Q9NQW7 623 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 TMPRSS4Q9NRS4 437 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ZDHHC18Q9NUE0 388 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 CASZ1Q86V15 1759 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 PTPRUQ92729 1446 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 PIK3C2AO00443 1686 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ALS2Q96Q42 1657 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 FAM208AQ9UK61 1670 aaKnown RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 SHANK3Q9BYB0 1731 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 A0A087X1B8 175 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 A8MV72 311 aaPredicted RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 HACD1B0YJ81 288 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 GMFGO60234 142 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 TLR5O60602 858 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ALDH2P05091 517 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 CYP2A7P20853 494 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 CRHR1P34998 444 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 CPT1AP50416 773 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 CDK9P50750 372 aaKnown RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 ZNF846Q147U1 533 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 SLC15A2Q16348 729 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ARMC12Q5T9G4 340 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 MAP1SQ66K74 1059 aaPredicted RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 ZNF772Q68DY9 489 aaPredicted RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 CCDC185Q8N715 623 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 OR2T34Q8NGX1 318 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 OR2T3Q8NH03 318 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 CLEC4CQ8WTT0 213 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 C10orf82Q8WW14 230 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 C19orf60Q96EN9 201 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 SLC47A1Q96FL8 570 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 DIRAS2Q96HU8 199 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ZNF317Q96PQ6 595 aaPredicted RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 ADAM2Q99965 735 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 ADI1Q9BV57 179 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 GIMAP2Q9UG22 337 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 TMCO1Q9UM00 188 aa8.68□□□□□ -1.02
RTN3-202ENST00000339997 PRPF19Q9UMS4 504 aaKnown RBP8.68□□□□□ -1.02
RTN3-202ENST00000339997 ENPP3O14638 875 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 SIX3O95343 332 aaPredicted RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 ANXA5P08758 320 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 ADORA2AP29274 412 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 CCR10P46092 362 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 MARSP56192 900 aaKnown RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 PCDH1Q08174 1060 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 PLD1Q13393 1074 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 DNASE1L3Q13609 305 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 MPP2Q14168 576 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 PSMD5Q16401 504 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 NFE2Q16621 373 aaPredicted RBP8.67□□□□□ -1.02
RTN3-202ENST00000339997 XKR6Q5GH73 641 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 GPR153Q6NV75 609 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 LINGO4Q6UY18 593 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 CYP4Z2PQ8N1L4 340 aa8.67□□□□□ -1.02
RTN3-202ENST00000339997 OR4K2Q8NGD2 314 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms