RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 CMC1Q7Z7K0 106 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 C17orf64Q86WR6 236 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 SAMD14Q8IZD0 417 aaPredicted RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 FIBINQ8TAL6 211 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 AASDHPPTQ9NRN7 309 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 KLHL28Q9NXS3 571 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 MYH13Q9UKX3 1938 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 TYRP14679 529 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 NRIP1P48552 1158 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 CLNS1AP54105 237 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 ALDH18A1P54886 795 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 PITX1P78337 314 aaPredicted RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 CRADDP78560 199 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 CYP4F8P98187 520 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 KDM1BQ8NB78 822 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 CCDC3Q9BQI4 270 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 THUMPD3Q9BV44 507 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 RAB11FIP5Q9BXF6 653 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 SLC7A5P2Q9GIP4 190 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 NSUN3Q9H649 340 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 TAGLN3Q9UI15 199 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 PCDHGA11Q9Y5H2 935 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 HCFC2Q9Y5Z7 792 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 XIRP1Q702N8 1843 aaKnown RBP6.85□□□□□ -1.31
SF3B1-201ENST00000335508 GPC1P35052 558 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 GRIA2P42262 883 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 KCNJ11Q14654 390 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 SLC1A5Q15758 541 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 GPRIN3Q6ZVF9 776 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 NRBF2Q96F24 287 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 MIPEPQ99797 713 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 NLNQ9BYT8 704 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 MIEF1Q9NQG6 463 aa6.85□□□□□ -1.31
SF3B1-201ENST00000335508 ANKDD1BA6NHY2 528 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 UPK3BL1B0FP48 263 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 UPK3BL2E5RIL1 263 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 PSMD12O00232 456 aaPredicted RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 LEFTY2O00292 366 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 KLF11O14901 512 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 KDELR3O43731 214 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 FCGR1AP12314 374 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 GDI1P31150 447 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 ARRB1P49407 418 aaPredicted RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 GPR15P49685 360 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SESN3P58005 492 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CHRNB3Q05901 458 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 DPY19L1Q2PZI1 675 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 PITRM1Q5JRX3 1037 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 INTS11Q5TA45 600 aaKnown RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 ANKRD27Q96NW4 1050 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 HGH1Q9BTY7 390 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 DNAJC11Q9NVH1 559 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SUSD2Q9UGT4 822 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CDH7Q9ULB5 785 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TEX264Q9Y6I9 313 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TPP1O14773 563 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CCNT2O60583 730 aaKnown RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CNTN5O94779 1100 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SERPIND1P05546 499 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 RAD23AP54725 363 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CYLC2Q14093 348 aaPredicted RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 ACAP2Q15057 778 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TOMM20Q15388 145 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TRIM71Q2Q1W2 868 aaKnown RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SPDYE7PQ495Y7 208 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 RFTN2Q52LD8 501 aaPredicted RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 LDLRAP1Q5SW96 308 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 FSTL4Q6MZW2 842 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 BNC2Q6ZN30 1099 aaPredicted RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SZRD1Q7Z422 152 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 HIPK4Q8NE63 616 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 ZFP28Q8NHY6 868 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CCDC138Q96M89 665 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CYP2S1Q96SQ9 504 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 ACOX2Q99424 681 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 THTPAQ9BU02 230 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 FAIM2Q9BWQ8 316 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 CEP44Q9C0F1 390 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 PCBD2Q9H0N5 130 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 NDUFAF1Q9Y375 327 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 FAM155AB1AL88 458 aaPredicted RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SNAP91O60641 907 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TULP3O75386 442 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 EDN1P05305 212 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 ENO1P06733 434 aaKnown RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 GSTM1P09488 218 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 MCCD1P59942 119 aaPredicted RBP6.84□□□□□ -1.31
SF3B1-201ENST00000335508 GSTM4Q03013 218 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SLC14A2Q15849 920 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TAZQ16635 292 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 ALFQ53S48 1182 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TAGAPQ8N103 731 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 AADATQ8N5Z0 425 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 KCTD4Q8WVF5 259 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SLC22A18Q96BI1 424 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 FAM136AQ96C01 138 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 SLC39A13Q96H72 371 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 TMEM237Q96Q45 408 aa6.84□□□□□ -1.31
SF3B1-201ENST00000335508 GPR22Q99680 433 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms