RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 UBA6A0AVT1 1052 aaPredicted RBP6.53□□□□□ -1.36
USP47-201ENST00000305481 SPECC1L-ADORA2AF8WAN1 911 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 H7C0S8 307 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 NEMP1O14524 444 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 IMPDH1P20839 514 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 HLA-FP30511 346 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 EPHA5P54756 1037 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 FPGSQ05932 587 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 SULT2A1Q06520 285 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 CDKN3Q16667 212 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 PLEKHG6Q3KR16 790 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 CTSL3PQ5NE16 218 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 METTL21CQ5VZV1 264 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 RETSATQ6NUM9 610 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 LYSMD3Q7Z3D4 306 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 ZSWIM9Q86XI8 627 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 TMEM25Q86YD3 366 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 ELMOD1Q8N336 334 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 SPPL3Q8TCT6 385 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 ACDQ96AP0 544 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 CCDC97Q96F63 343 aaPredicted RBP6.53□□□□□ -1.36
USP47-201ENST00000305481 CLPTM1LQ96KA5 538 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 RPL10LQ96L21 214 aaKnown RBP6.53□□□□□ -1.36
USP47-201ENST00000305481 TCF12Q99081 682 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 TNKS2Q9H2K2 1166 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 ZNF385DQ9H6B1 395 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 MAGEE1Q9HCI5 957 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 ABCB8Q9NUT2 735 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.53□□□□□ -1.36
USP47-201ENST00000305481 FNDC3AQ9Y2H6 1198 aaKnown RBP6.53□□□□□ -1.36
USP47-201ENST00000305481 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.53□□□□□ -1.36
USP47-201ENST00000305481 ZNF711Q9Y462 761 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 HCFC2Q9Y5Z7 792 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 MYOFQ9NZM1 2061 aa6.53□□□□□ -1.36
USP47-201ENST00000305481 GAPDHSO14556 408 aaPredicted RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 STX7O15400 261 aaKnown RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 HTRA2O43464 458 aaPredicted RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 ARSAP15289 507 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 CCND1P24385 295 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 IRS1P35568 1242 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 HMGCLP35914 325 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 PGM1P36871 562 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 STK19P49842 368 aaPredicted RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 MNAT1P51948 309 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 HK2P52789 917 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 LBX1P52954 281 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 AP1S1P61966 158 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 ASPHQ12797 758 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 PPIGQ13427 754 aaKnown RBP eCLIP6.52□□□□□ -1.37
USP47-201ENST00000305481 NAA25Q14CX7 972 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 PTPRNQ16849 979 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 KHDC1Q4VXA5 237 aaKnown RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 RALGPS1Q5JS13 557 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 PPM1LQ5SGD2 360 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 SH2D4BQ5SQS7 431 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 WASHC2DQ5SRD0 308 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 TMEM198Q66K66 360 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 FRMD7Q6ZUT3 714 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 POF1BQ8WVV4 589 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 USP13Q92995 863 aaPredicted RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 L3HYPDHQ96EM0 354 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 MYO19Q96H55 970 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 EMILIN2Q9BXX0 1053 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 C1orf21Q9H246 121 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 MMADHCQ9H3L0 296 aaPredicted RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 KIAA1522Q9P206 1035 aaPredicted RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 VTI1BQ9UEU0 232 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 LZTS1Q9Y250 596 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 OAS3Q9Y6K5 1087 aaKnown RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 MTCL1Q9Y4B5 1905 aaKnown RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 ALPK3Q96L96 1907 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 LOC100653049A0A140TA62 436 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 CCDC189A1A4V9 331 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 LRRC14BA6NHZ5 514 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 TLL1O43897 1013 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 NDUFS3O75489 264 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 KRT34O76011 436 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 SRP72O76094 671 aaKnown RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 RHOBTB1O94844 696 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 TSPAN12O95859 305 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 HOXB8P17481 243 aaPredicted RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 TSPAN8P19075 237 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 EN2P19622 333 aaPredicted RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 CTNNB1P35222 781 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 CSNK1DP48730 415 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 SLC25A3Q00325 362 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 NFKB2Q00653 900 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 KLF10Q13118 480 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 PDAP1Q13442 181 aaKnown RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 E2F5Q15329 346 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 TEAD2Q15562 447 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 PDCD2Q16342 344 aaPredicted RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 UNC50Q53HI1 259 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 ZNF678Q5SXM1 525 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 ARMC12Q5T9G4 340 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 CYHR1Q6ZMK1 362 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 RYBPQ8N488 228 aaPredicted RBP6.52□□□□□ -1.37
USP47-201ENST00000305481 GIMAP7Q8NHV1 300 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 CCDC126Q96EE4 140 aa6.52□□□□□ -1.37
USP47-201ENST00000305481 MAELQ96JY0 434 aaKnown RBP6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms