RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ECSITQ9BQ95 431 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 PACSIN3Q9UKS6 424 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 FAM50BQ9Y247 325 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 MED16Q9Y2X0 877 aa23.89■■□□□ 1.42
TRIM54-201ENST00000296098 ANKRD66B4E2M5 251 aa23.89■■□□□ 1.41
TRIM54-201ENST00000296098 KERAO60938 352 aa23.89■■□□□ 1.41
TRIM54-201ENST00000296098 CD160O95971 181 aa23.89■■□□□ 1.41
TRIM54-201ENST00000296098 RAG1P15918 1043 aa23.89■■□□□ 1.41
TRIM54-201ENST00000296098 RAD51Q06609 339 aa23.89■■□□□ 1.41
TRIM54-201ENST00000296098 PFKFB4Q16877 469 aa23.89■■□□□ 1.41
TRIM54-201ENST00000296098 ZNF423Q2M1K9 1284 aa23.89■■□□□ 1.41
TRIM54-201ENST00000296098 SLC39A11Q8N1S5 342 aa23.89■■□□□ 1.41
TRIM54-201ENST00000296098 NPAS2Q99743 824 aa23.89■■□□□ 1.41
TRIM54-201ENST00000296098 LHX3Q9UBR4 397 aa23.89■■□□□ 1.41
TRIM54-201ENST00000296098 FKBPLQ9UIM3 349 aa23.89■■□□□ 1.41
TRIM54-201ENST00000296098 EIF4E1BA6NMX2 242 aaKnown RBP23.88■■□□□ 1.41
TRIM54-201ENST00000296098 CFLARO15519 480 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 GPC4O75487 556 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 SMNDC1O75940 238 aaKnown RBP eCLIP23.88■■□□□ 1.41
TRIM54-201ENST00000296098 MTHFD2P13995 350 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 GFAPP14136 432 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 CDC16Q13042 620 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 FASTKQ14296 549 aaKnown RBP23.88■■□□□ 1.41
TRIM54-201ENST00000296098 PAQR3Q6TCH7 311 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 SLC39A5Q6ZMH5 540 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 RNF111Q6ZNA4 994 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 HJURPQ8NCD3 748 aaPredicted RBP23.88■■□□□ 1.41
TRIM54-201ENST00000296098 KIAA1191Q96A73 305 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 C19orf60Q96EN9 201 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 PSMD12O00232 456 aaPredicted RBP23.88■■□□□ 1.41
TRIM54-201ENST00000296098 SIX3O95343 332 aaPredicted RBP23.88■■□□□ 1.41
TRIM54-201ENST00000296098 MZF1P28698 734 aaPredicted RBP23.88■■□□□ 1.41
TRIM54-201ENST00000296098 MC4RP32245 332 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 CDH13P55290 713 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 ATP6V0D1P61421 351 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 RAB33AQ14088 237 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 TRIM60Q495X7 471 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 SETMARQ53H47 684 aaPredicted RBP23.88■■□□□ 1.41
TRIM54-201ENST00000296098 NCEH1Q6PIU2 408 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 DNAJB7Q7Z6W7 309 aaPredicted RBP23.88■■□□□ 1.41
TRIM54-201ENST00000296098 TMEM150AQ86TG1 271 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 HMGCLL1Q8TB92 370 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 STAG3L4Q8TBR4 150 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 MRPL1Q9BYD6 325 aaKnown RBP23.88■■□□□ 1.41
TRIM54-201ENST00000296098 VCX3BQ9H321 246 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 RNF112Q9ULX5 631 aa23.88■■□□□ 1.41
TRIM54-201ENST00000296098 OAS3Q9Y6K5 1087 aaKnown RBP23.88■■□□□ 1.41
TRIM54-201ENST00000296098 TYW5A2RUC4 315 aaKnown RBP23.87■■□□□ 1.41
TRIM54-201ENST00000296098 LCHNA4D1U4 455 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 SUPT3HB4E1H0 165 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 SCAMP3O14828 347 aaKnown RBP23.87■■□□□ 1.41
TRIM54-201ENST00000296098 PFDN6O15212 129 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 SUPT3HO75486 399 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 URODP06132 367 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 DPP6P42658 865 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 TTPAP49638 278 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 EPHB3P54753 998 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 PKNOX1P55347 436 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 TLE2Q04725 743 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 FLOT2Q14254 428 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 PTK2BQ14289 1009 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 PTPRNQ16849 979 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 PSAPL1Q6NUJ1 521 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 CYHR1Q6ZMK1 362 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 CLYBLQ8N0X4 340 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 MICAL1Q8TDZ2 1067 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 USP13Q92995 863 aaPredicted RBP23.87■■□□□ 1.41
TRIM54-201ENST00000296098 TMA16Q96EY4 203 aaKnown RBP23.87■■□□□ 1.41
TRIM54-201ENST00000296098 GPR21Q99679 349 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 UTP6Q9NYH9 597 aaKnown RBP23.87■■□□□ 1.41
TRIM54-201ENST00000296098 ADAMTS6Q9UKP5 1117 aa23.87■■□□□ 1.41
TRIM54-201ENST00000296098 H3BNX3 289 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 STX7O15400 261 aaKnown RBP23.86■■□□□ 1.41
TRIM54-201ENST00000296098 CDK14O94921 469 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 PYGLP06737 847 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 XRCC1P18887 633 aaPredicted RBP23.86■■□□□ 1.41
TRIM54-201ENST00000296098 VEGFBP49765 207 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 CDKN1CP49918 316 aaPredicted RBP23.86■■□□□ 1.41
TRIM54-201ENST00000296098 SH3BP2P78314 561 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 STX5Q13190 355 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 CEACAM7Q14002 265 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 INO80DQ53TQ3 878 aaPredicted RBP23.86■■□□□ 1.41
TRIM54-201ENST00000296098 TTC30BQ8N4P2 665 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 MID1IP1Q9NPA3 183 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 BCAP29Q9UHQ4 241 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 INSL5Q9Y5Q6 135 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 LRRC14BA6NHZ5 514 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 RHOAP61586 193 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 EML3Q32P44 896 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 UGT3A2Q3SY77 523 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 AGKQ53H12 422 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 FAM219BQ5XKK7 198 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 LARP4Q71RC2 724 aaKnown RBP eCLIP23.86■■□□□ 1.41
TRIM54-201ENST00000296098 PIANPQ8IYJ0 282 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 BIRC8Q96P09 236 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 SLC22A12Q96S37 553 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 CYP2S1Q96SQ9 504 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 FEM1AQ9BSK4 669 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 HACD3Q9P035 362 aa23.86■■□□□ 1.41
TRIM54-201ENST00000296098 OBSL1O75147 1896 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms