RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 HS3ST2Q9Y278 367 aa16.58■□□□□ 0.25
CCDC40-201ENST00000269318 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.58■□□□□ 0.25
CCDC40-201ENST00000269318 CHD7Q9P2D1 2997 aa16.58■□□□□ 0.25
CCDC40-201ENST00000269318 UBA6A0AVT1 1052 aaPredicted RBP16.58■□□□□ 0.24
CCDC40-201ENST00000269318 IGSF6O95976 241 aa16.58■□□□□ 0.24
CCDC40-201ENST00000269318 HNRNPA1P09651 372 aaKnown RBP eCLIP16.58■□□□□ 0.24
CCDC40-201ENST00000269318 GKP32189 559 aa16.58■□□□□ 0.24
CCDC40-201ENST00000269318 TTPAP49638 278 aa16.58■□□□□ 0.24
CCDC40-201ENST00000269318 STK19P49842 368 aaPredicted RBP16.58■□□□□ 0.24
CCDC40-201ENST00000269318 SNCBQ16143 134 aa16.58■□□□□ 0.24
CCDC40-201ENST00000269318 CFAP157Q5JU67 520 aa16.58■□□□□ 0.24
CCDC40-201ENST00000269318 LEMD2Q8NC56 503 aa16.58■□□□□ 0.24
CCDC40-201ENST00000269318 OR2AP1Q8NGE2 309 aa16.58■□□□□ 0.24
CCDC40-201ENST00000269318 RPL10LQ96L21 214 aaKnown RBP16.58■□□□□ 0.24
CCDC40-201ENST00000269318 VPS9D1Q9Y2B5 631 aa16.58■□□□□ 0.24
CCDC40-201ENST00000269318 A0A0J9YYE9 177 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 H3BMM5 538 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 SRP72O76094 671 aaKnown RBP16.57■□□□□ 0.24
CCDC40-201ENST00000269318 TRBC1P01850 177 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 MYOGP15173 224 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 SP100P23497 879 aaPredicted RBP16.57■□□□□ 0.24
CCDC40-201ENST00000269318 NTHL1P78549 312 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 NFKB2Q00653 900 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 PDAP1Q13442 181 aaKnown RBP16.57■□□□□ 0.24
CCDC40-201ENST00000269318 ZNF77Q15935 545 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 CDKN3Q16667 212 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 SEL1L3Q68CR1 1132 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 SLC22A9Q8IVM8 553 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 KDM1BQ8NB78 822 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 ISG20Q96AZ6 181 aaKnown RBP16.57■□□□□ 0.24
CCDC40-201ENST00000269318 C19orf43Q9BQ61 176 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 GPR63Q9BZJ6 419 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 ATP13A3Q9H7F0 1226 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 CYP4F12Q9HCS2 524 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 TAS2R13Q9NYV9 303 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 VTI1BQ9UEU0 232 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 PKP3Q9Y446 797 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 OAS3Q9Y6K5 1087 aaKnown RBP16.57■□□□□ 0.24
CCDC40-201ENST00000269318 SLCO1B7G3V0H7 640 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 GSC2O15499 205 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 XYLBO75191 536 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 RHOBTB1O94844 696 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 RB1P06400 928 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 CD9P21926 228 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 ADARP55265 1226 aaKnown RBP16.57■□□□□ 0.24
CCDC40-201ENST00000269318 PTPRNQ16849 979 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 ZRANB3Q5FWF4 1079 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 METTL21CQ5VZV1 264 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 ZSWIM9Q86XI8 627 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 FAM13CQ8NE31 585 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 IRF7Q92985 503 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 FAM136AQ96C01 138 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 OR52B2Q96RD2 323 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 SHCBP1LQ9BZQ2 653 aa16.57■□□□□ 0.24
CCDC40-201ENST00000269318 NEDD8-MDP1E9PL57 170 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 GYG2O15488 501 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 OR1I1O60431 355 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 HSPA1AP0DMV8 641 aaKnown RBP16.56■□□□□ 0.24
CCDC40-201ENST00000269318 HSPA1BP0DMV9 641 aaKnown RBP16.56■□□□□ 0.24
CCDC40-201ENST00000269318 CPA2P48052 419 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 OR4D1Q15615 310 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 AARS2Q5JTZ9 985 aaKnown RBP16.56■□□□□ 0.24
CCDC40-201ENST00000269318 CTSL3PQ5NE16 218 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 PAQR3Q6TCH7 311 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 TEX9Q8N6V9 391 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 FBXO27Q8NI29 283 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 RHEBL1Q8TAI7 183 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 L3HYPDHQ96EM0 354 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 ZSWIM3Q96MP5 696 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 CCDC68Q9H2F9 335 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 LINC00597Q9H2U6 94 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 TFB2MQ9H5Q4 396 aaKnown RBP16.56■□□□□ 0.24
CCDC40-201ENST00000269318 SYTL2Q9HCH5 934 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 TCF7L2Q9NQB0 619 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 BAIAP2L1Q9UHR4 511 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 FAM50BQ9Y247 325 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 HCFC2Q9Y5Z7 792 aa16.56■□□□□ 0.24
CCDC40-201ENST00000269318 F8W8V4 182 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 GAPDHSO14556 408 aaPredicted RBP16.55■□□□□ 0.24
CCDC40-201ENST00000269318 GPR39O43194 453 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 PKMP14618 531 aaKnown RBP16.55■□□□□ 0.24
CCDC40-201ENST00000269318 TCF3P15923 654 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 IMPDH1P20839 514 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 HNF1BP35680 557 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 CACNG1Q06432 222 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 GALNT1Q10472 559 aaPredicted RBP16.55■□□□□ 0.24
CCDC40-201ENST00000269318 C22orf39Q6P5X5 142 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 FRMD7Q6ZUT3 714 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 GRASPQ7Z6J2 395 aaPredicted RBP16.55■□□□□ 0.24
CCDC40-201ENST00000269318 GRIN3AQ8TCU5 1115 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 ZNF707Q96C28 371 aaPredicted RBP16.55■□□□□ 0.24
CCDC40-201ENST00000269318 PHF21BQ96EK2 531 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 ATOH8Q96SQ7 321 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 BBS2Q9BXC9 721 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 DERL2Q9GZP9 239 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 GSTO2Q9H4Y5 243 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 ZFYVE1Q9HBF4 777 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 SPHK2Q9NRA0 654 aa16.55■□□□□ 0.24
CCDC40-201ENST00000269318 FNDC3AQ9Y2H6 1198 aaKnown RBP16.55■□□□□ 0.24
CCDC40-201ENST00000269318 CAPN8A6NHC0 703 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms