RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 DDX43Q9NXZ2 648 aaKnown RBP13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 PCDHB9Q9Y5E1 797 aa13.92□□□□□ -0.18
CCDC88A-201ENST00000263630 TRAV19A0A0A6YYK7 116 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 LHCGRP22888 699 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 KLHL26Q53HC5 615 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 ALG1LQ6GMV1 187 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 SP8Q8IXZ3 490 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 GPR135Q8IZ08 494 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 LSM14AQ8ND56 463 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 FBXO25Q8TCJ0 367 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 ABCG4Q9H172 646 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 ADGRL3Q9HAR2 1447 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 ZNF12P17014 697 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 CPTPQ5TA50 214 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 DET1Q7L5Y6 550 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 THAP5Q7Z6K1 395 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 PARGQ86W56 976 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 DNASE1L2Q92874 299 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 UFD1Q92890 307 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 SH2D3AQ9BRG2 576 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 TAPBPLQ9BX59 468 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 ADGRE2Q9UHX3 823 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 RPL26L1Q9UNX3 145 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 NOX1Q9Y5S8 564 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 PSKH1P11801 424 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 LAMP2P13473 410 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 CYP2C18P33260 490 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 KXD1Q9BQD3 176 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 TRPV4Q9HBA0 871 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 MYH15Q9Y2K3 1946 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 PAMR1Q6UXH9 720 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 PCDH20Q8N6Y1 951 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 BRD9Q9H8M2 597 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 ABCB9Q9NP78 766 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 AGRPO00253 132 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 MATN2O00339 956 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 NKRFO15226 690 aaKnown RBP eCLIP13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 TACSTD2P09758 323 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 CDH13P55290 713 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 RPL38P63173 70 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 FERD3LQ96RJ6 166 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 ZSCAN5CA6NGD5 496 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 HSPA14Q0VDF9 509 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 AIMP2Q13155 320 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 SPATA19Q7Z5L4 167 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 COQ8BQ96D53 544 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 ZSCAN5AQ9BUG6 496 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 TM9SF3Q9HD45 589 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 SNCAIPQ9Y6H5 919 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 HMBOX1Q6NT76 420 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 RAD9BQ6WBX8 426 aa13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 CIR1Q86X95 450 aaPredicted RBP13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 NXF3Q9H4D5 531 aaKnown RBP13.91□□□□□ -0.18
CCDC88A-201ENST00000263630 IGFBP5P24593 272 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 GRIA4P48058 902 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 COPS4Q9BT78 406 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 KCNN3Q9UGI6 736 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 HACL1Q9UJ83 578 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 KIF20BQ96Q89 1820 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 SSX4O60224 188 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 AMHP03971 560 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 RORCP51449 518 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 PRKCDQ05655 676 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 ZNF268Q14587 947 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 PIWIL4Q7Z3Z4 852 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 PIGXQ8TBF5 258 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 ABCC13Q9NSE7 274 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 COL15A1P39059 1388 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 RPL22P35268 128 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 MC1RQ01726 317 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 TMC3Q7Z5M5 1100 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 LAPTM4BQ86VI4 370 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 GPR156Q8NFN8 814 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 H0Y858 1186 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 CACNB4O00305 520 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 PDYNP01213 254 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 GTF2A2P52657 109 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 PRR5P85299 388 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 PCDH1Q08174 1060 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 PARP6Q2NL67 630 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 PPP1R15BQ5SWA1 713 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 USP43Q70EL4 1123 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 LGI2Q8N0V4 545 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 KAT2AQ92830 837 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 FOXN1O15353 648 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 SLC22A3O75751 556 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 IL12BP29460 328 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 ERP29P30040 261 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 PPP3CAQ08209 521 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 TLR1Q15399 786 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 ZNF782Q6ZMW2 699 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 DENND1CQ8IV53 801 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 ZNF565Q8N9K5 539 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 ADAMTS15Q8TE58 950 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 PRMT6Q96LA8 375 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 C14orf105Q9NVL8 296 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 COLEC10Q9Y6Z7 277 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 CCL15-CCL14A0A0B4J2E2 113 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 E2F3O00716 465 aa13.9□□□□□ -0.18
CCDC88A-201ENST00000263630 UBXN7O94888 489 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms