RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PTGR2Q8N8N7 351 aaPredicted RBP12.39□□□□□ -0.43
NUP88-201ENST00000225696 TRPV3Q8NET8 790 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 TNIP2Q8NFZ5 429 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 SEPT8Q92599 483 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 TMEM125Q96AQ2 219 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 CCDC126Q96EE4 140 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 L3HYPDHQ96EM0 354 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 FEM1CQ96JP0 617 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 KLHL5Q96PQ7 755 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 SEPHS2Q99611 448 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 ERVK-6Q9BXR3 956 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 NDUFAF1Q9Y375 327 aa12.39□□□□□ -0.43
NUP88-201ENST00000225696 KANSL1LA0AUZ9 987 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 ZNF701M0R085 212 aaPredicted RBP12.38□□□□□ -0.43
NUP88-201ENST00000225696 KCNH1O95259 989 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 MTHFD2P13995 350 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 HGFP14210 728 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 AXLP30530 894 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 ZFP36L2P47974 494 aaKnown RBP12.38□□□□□ -0.43
NUP88-201ENST00000225696 CD97P48960 835 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 ATP4BP51164 291 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 CLCNKBP51801 687 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 CD300CQ08708 224 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 INPP5AQ14642 412 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 IRAK1BP1Q5VVH5 260 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 FAM117BQ6P1L5 589 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 DCDC5Q6ZRR9 648 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 SLC22A9Q8IVM8 553 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 KIAA2013Q8IYS2 634 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 MIER2Q8N344 545 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 ACDQ96AP0 544 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 DCPSQ96C86 337 aaKnown RBP12.38□□□□□ -0.43
NUP88-201ENST00000225696 TUBGCP3Q96CW5 907 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 PPP1R10Q96QC0 940 aaKnown RBP12.38□□□□□ -0.43
NUP88-201ENST00000225696 SLC30A3Q99726 388 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 HOPXQ9BPY8 73 aaPredicted RBP12.38□□□□□ -0.43
NUP88-201ENST00000225696 C9orf16Q9BUW7 83 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 MRM3Q9HC36 420 aaKnown RBP12.38□□□□□ -0.43
NUP88-201ENST00000225696 TMLHEQ9NVH6 421 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 TBCCD1Q9NVR7 557 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 MIOSQ9NXC5 875 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 POLG2Q9UHN1 485 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 TIMM22Q9Y584 194 aa12.38□□□□□ -0.43
NUP88-201ENST00000225696 OAS3Q9Y6K5 1087 aaKnown RBP12.38□□□□□ -0.43
NUP88-201ENST00000225696 RBM47A0AV96 593 aaKnown RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 K7EPI3 171 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 TREHO43280 583 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 MOCS2O96007 188 aaPredicted RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 PEX11BO96011 259 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 PRSS56P0CW18 603 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 PRDX3P30048 256 aaKnown RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 HMOX2P30519 316 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 RFC2P35250 354 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 CAPGP40121 348 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 CD86P42081 329 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 CLCN5P51795 746 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 GNA12Q03113 381 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 TRAF2Q12933 501 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 ATP1A4Q13733 1029 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 ZNF829Q3KNS6 432 aaPredicted RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 PAN2Q504Q3 1202 aaKnown RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 OTUD3Q5T2D3 398 aaPredicted RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 SCIMPQ6UWF3 145 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 ABRAXAS1Q6UWZ7 409 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 ITIH5Q86UX2 942 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 DHRSXQ8N5I4 330 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 SLC15A4Q8N697 577 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 ZBTB8BQ8NAP8 495 aaPredicted RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 OR6J1Q8NGC5 347 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 PTCD2Q8WV60 388 aaKnown RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 PPP1R14BQ96C90 147 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 ERLEC1Q96DZ1 483 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 FCRL2Q96LA5 508 aaPredicted RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 MUS81Q96NY9 551 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 CSF3RQ99062 836 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 RTP3Q9BQQ7 232 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 MTG1Q9BT17 334 aaPredicted RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 TSPYL2Q9H2G4 693 aaPredicted RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 NOL6Q9H6R4 1146 aaKnown RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 SDR39U1Q9NRG7 319 aaPredicted RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 SMPD3Q9NY59 655 aaPredicted RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 IKZF3Q9UKT9 509 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 BLOC1S6Q9UL45 172 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 TRIM64BA6NI03 449 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 J3KR12 359 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 AZIN1O14977 448 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 BAIAP3O94812 1187 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 CD1DP15813 335 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 TCF3P15923 654 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 SHMT2P34897 504 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 CASP2P42575 452 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 RPS9P46781 194 aaKnown RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 C21orf59P57076 290 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 LIPEQ05469 1076 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 EIF4EBP2Q13542 120 aaPredicted RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 SEMA3AQ14563 771 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 SLC44A4Q53GD3 710 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 TMEM214Q6NUQ4 689 aaKnown RBP12.37□□□□□ -0.43
NUP88-201ENST00000225696 BLOC1S3Q6QNY0 202 aa12.37□□□□□ -0.43
NUP88-201ENST00000225696 KIAA0408Q6ZU52 694 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms