RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MAFAQ8NHW3 353 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 ASAP3Q8TDY4 903 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 RFFLQ8WZ73 363 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 L3MBTL2Q969R5 705 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 CNBD2Q96M20 576 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 DPEP2Q9H4A9 486 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 WDR55Q9H6Y2 383 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 PTRH2Q9Y3E5 179 aaKnown RBP3.58□□□□□ -1.84
SCN1A-221ENST00000641996 HSPB11Q9Y547 144 aa3.58□□□□□ -1.84
SCN1A-221ENST00000641996 FBLL1A6NHQ2 334 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TISP43B9A030 160 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 B9A039 149 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TSTD3H0UI37 97 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PCDH17O14917 1159 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 NPC1O15118 1278 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 MYO1DO94832 1006 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 NQO2P16083 231 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF25P17030 456 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PEX2P28328 305 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SLC1A6P48664 564 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CLCN4P51793 760 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FOXO4P98177 505 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ILF2Q12905 390 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PAK1Q13153 545 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KNOP1Q1ED39 458 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KIAA1324Q6UXG2 1013 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 LRRC69Q6ZNQ3 347 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KCTD9Q7L273 389 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FUNDC1Q8IVP5 155 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 OR8K5Q8NH50 307 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 DEPDC1BQ8WUY9 529 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PIH1D2Q8WWB5 315 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PTERQ96BW5 349 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SHDQ96IW2 340 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CAMKK2Q96RR4 588 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ING2Q9H160 280 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ADAM7Q9H2U9 754 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 RAVER2Q9HCJ3 691 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PNPLA3Q9NST1 481 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 DTNAQ9Y4J8 743 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PCDHGA5Q9Y5G8 931 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CHURC1-FNTBB4DL54 471 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 MAGEC1O60732 1142 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SCO1O75880 301 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GNA11P29992 359 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PDIA3P30101 505 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 VSX2P58304 361 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FGL1Q08830 312 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GPR107Q5VW38 600 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 DCLRE1AQ6PJP8 1040 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 AFTPHQ6ULP2 937 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 USP51Q70EK9 711 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SSX7Q7RTT5 188 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 LRRC70Q7Z2Q7 622 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FNDC5Q8NAU1 212 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PANK1Q8TE04 598 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CCDC51Q96ER9 411 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 EHD4Q9H223 541 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 YAE1D1Q9NRH1 226 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 METTL5Q9NRN9 209 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SIRT5Q9NXA8 310 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PKDREJQ9NTG1 2253 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF12P17014 697 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CORO1AP31146 461 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 VHLP40337 213 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CDKN2CP42773 168 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ENTPD1P49961 510 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF135P52742 658 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 AP3S2P59780 193 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GALEQ14376 348 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CDC73Q6P1J9 531 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FAM83HQ6ZRV2 1179 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SLC2A14Q8TDB8 520 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 OR1F2PQ96R84 312 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PSMB7Q99436 277 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ISCUQ9H1K1 167 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 LRRC19Q9H756 370 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ABCB8Q9NUT2 735 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 EXD2Q9NVH0 621 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 FREM3P0C091 2139 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SMCO3A2RU48 225 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GLI1P08151 1106 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PABPC1P11940 636 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 S100GP29377 79 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 AVPR2P30518 371 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TMPOP42166 694 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SERPINB10P48595 397 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 KCNAB2Q13303 367 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 TXNRD1Q16881 649 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 SLC25A25Q6KCM7 469 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 NDUFAF7Q7L592 441 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 DDIASQ8IXT1 998 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PCYOX1LQ8NBM8 494 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 OR5H6Q8NGV6 325 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 GOLPH3LQ9H4A5 285 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 C14orf93Q9H972 538 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 CACYBPQ9HB71 228 aaKnown RBP3.57□□□□□ -1.84
SCN1A-221ENST00000641996 AHSPQ9NZD4 102 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 PKD2L1Q9P0L9 805 aa3.57□□□□□ -1.84
SCN1A-221ENST00000641996 ANKMY1Q9P2S6 941 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms