RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ZSWIM2Q8NEG5 633 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 HERC2P3Q9BVR0 1158 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 GPN2Q9H9Y4 310 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 IL1RAPQ9NPH3 570 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 LATS2Q9NRM7 1088 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PRMT7Q9NVM4 692 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 DHRS7Q9Y394 339 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 L7N2F9 121 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SUV39H1O43463 412 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 HTRA2O43464 458 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PROM1O43490 865 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PRAF2O60831 178 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SLC22A3O75751 556 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 RPL17P18621 184 aaKnown RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PRKAR1BP31321 381 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ETV3P41162 512 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 GRIA4P48058 902 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 NIPAL4Q0D2K0 466 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 NME3Q13232 169 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 HES5Q5TA89 166 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SPOCK2Q92563 424 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 LPAR1Q92633 364 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 KCTD7Q96MP8 289 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 RSPH9Q9H1X1 276 aaPredicted RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 RIOX1Q9H6W3 641 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF302Q9NR11 478 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SNX15Q9NRS6 342 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 NDFIP2Q9NV92 336 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SLIT3O75094 1523 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 DNAJB6O75190 326 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 ACSL1P33121 698 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 PPP3R1P63098 170 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 DCAF6Q58WW2 860 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 C4orf19Q8IY42 314 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 FNDC5Q8NAU1 212 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 OR52L1Q8NGH7 329 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 CDK5RAP1Q96SZ6 601 aaKnown RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 VRTNQ9H8Y1 702 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 SLC38A7Q9NVC3 462 aa4.67□□□□□ -1.66
SCN1A-220ENST00000641603 CNOT6Q9ULM6 557 aaKnown RBP4.67□□□□□ -1.66
SCN1A-220ENST00000641603 MN1Q10571 1320 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 RCCD1A6NED2 376 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 KPNA5O15131 536 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ALX3O95076 343 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SGPL1O95470 568 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CAPZA1P52907 286 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 UGT2B15P54855 530 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SV2CQ496J9 727 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PTRHD1Q6GMV3 140 aaKnown RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TRIM40Q6P9F5 258 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 RFWD3Q6PCD5 774 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SCARA5Q6ZMJ2 495 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 GALNT7Q86SF2 657 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ZBED3Q96IU2 234 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TXNDC15Q96J42 360 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 COPS4Q9BT78 406 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 HMX3A6NHT5 357 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PPEF2O14830 753 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TFRCP02786 760 aaKnown RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CYP11A1P05108 521 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 DCKP27707 260 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 DYNLL1P63167 89 aaKnown RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CREMQ03060 361 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SLC1A5Q15758 541 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TIGD6Q17RP2 521 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 IDNKQ5T6J7 187 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CREB3L2Q70SY1 520 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 FAM220AQ7Z4H9 259 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ADGRD2Q7Z7M1 963 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 FAM35AQ86V20 835 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 DNAJC10Q8IXB1 793 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF781Q8N8C0 355 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 OR6B3Q8NGW1 331 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SLC7A14Q8TBB6 771 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 SGCDQ92629 289 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 DNAJC1Q96KC8 554 aaKnown RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ALG2Q9H553 416 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 MID1IP1Q9NPA3 183 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 RGS17Q9UGC6 210 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ADAMTS13Q76LX8 1427 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 AQP9O43315 295 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 CYP3A4P08684 503 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TMEM132DQ14C87 1099 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ATP6AP1Q15904 470 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TAF8Q7Z7C8 310 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 INO80EQ8NBZ0 244 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 TRPV3Q8NET8 790 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 FLAD1Q8NFF5 587 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ATXN7L3BQ96GX2 97 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 NFKBIZQ9BYH8 718 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 FAM49AQ9H0Q0 323 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-220ENST00000641603 COQ10BQ9H8M1 238 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 ACTR8Q9H981 624 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 GGA3Q9NZ52 723 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 FABP12A6NFH5 140 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 NUDT19A8MXV4 375 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 BOLA2-SMG1P6H3BVE0 249 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 USP12O75317 370 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 PET100P0DJ07 73 aa4.66□□□□□ -1.66
SCN1A-220ENST00000641603 LCN1P31025 176 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms