RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	ERAP2	Q6P179	960 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	DPPA4	Q7L190	304 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	CILP2	Q8IUL8	1156 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	DENND6A	Q8IWF6	608 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	OTUD6B	Q8N6M0	293 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	ALKBH8	Q96BT7	664 aa	Known RBP	11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	SMC6	Q96SB8	1091 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	RHOJ	Q9H4E5	214 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	CNOT10	Q9H9A5	744 aa	Known RBP	11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	FBRS	Q9HAH7	460 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	BPIFA1	Q9NP55	256 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	PCDH12	Q9NPG4	1184 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	DYRK4	Q9NR20	520 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	B4GALT6	Q9UBX8	382 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	FKBPL	Q9UIM3	349 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	APPL1	Q9UKG1	709 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	SARDH	Q9UL12	918 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823	PLXNB3	Q9ULL4	1909 aa		11.76	□□□□□ -0.53
CLN6-223	ENST00000637823		A0A0U1RQS6	177 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	ANTXRL	A6NF34	631 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	OR51F1	A6NGY5	319 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823		A8MX80	341 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	MAN2B1	O00754	1011 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	PFDN6	O15212	129 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	S1PR4	O95977	384 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	IL1B	P01584	269 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	SLC4A1	P02730	911 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	BMP1	P13497	986 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	BRAF	P15056	766 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	CREB1	P16220	341 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	KRT4	P19013	534 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	OGN	P20774	298 aa	Known RBP	11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	GABRB3	P28472	473 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	MC4R	P32245	332 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	WAS	P42768	502 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	CD151	P48509	253 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	XIAP	P98170	497 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	TFF2	Q03403	129 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	SLC18A2	Q05940	514 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	BMPR2	Q13873	1038 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	ARHGEF7	Q14155	803 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	HSF5	Q4G112	596 aa	Predicted RBP	11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	C2orf27A	Q580R0	203 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	ZDHHC20	Q5W0Z9	365 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	LRRC66	Q68CR7	880 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	FBXL19	Q6PCT2	694 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	SH2D5	Q6ZV89	423 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	PARS2	Q7L3T8	475 aa	Known RBP	11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	TSPAN33	Q86UF1	283 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	ZC3HC1	Q86WB0	502 aa	Known RBP	11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	MMAA	Q8IVH4	418 aa	Known RBP	11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	ADHFE1	Q8IWW8	467 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	RAVER1	Q8IY67	606 aa	Known RBP	11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	ACMSD	Q8TDX5	336 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	FAM3C	Q92520	227 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	PBXIP1	Q96AQ6	731 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	ARRDC3	Q96B67	414 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	VPS39	Q96JC1	886 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	SERAC1	Q96JX3	654 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	GPR22	Q99680	433 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	GABRG3	Q99928	467 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	HDAC8	Q9BY41	377 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	RSPH9	Q9H1X1	276 aa	Predicted RBP	11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	KCNK9	Q9NPC2	374 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	ZDHHC4	Q9NPG8	344 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	RAD18	Q9NS91	495 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	MARCH4	Q9P2E8	410 aa	Predicted RBP	11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	SMG5	Q9UPR3	1016 aa	Known RBP	11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	VPS9D1	Q9Y2B5	631 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	MTO1	Q9Y2Z2	717 aa	Known RBP	11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	SLC30A1	Q9Y6M5	507 aa		11.75	□□□□□ -0.53
CLN6-223	ENST00000637823	PLXNA2	O75051	1894 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	PIKFYVE	Q9Y2I7	2098 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	RGSL1	A5PLK6	1076 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	PRPF4	O43172	522 aa	Known RBP eCLIP	11.74	□□□□□ -0.53	2e-7	■■■■■ 31.7
CLN6-223	ENST00000637823	RFPL1	O75677	317 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	HAUS5	O94927	633 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	KLF8	O95600	359 aa	Predicted RBP	11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	ADH1B	P00325	375 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	PYGB	P11216	843 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	BPI	P17213	487 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	PML	P29590	882 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	FOXN2	P32314	431 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	PPARG	P37231	505 aa	Predicted RBP	11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	STC1	P52823	247 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	SLC18A1	P54219	525 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	MPP1	Q00013	466 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	SATB1	Q01826	763 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	CACNG1	Q06432	222 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	CCDC15	Q0P6D6	951 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	ELP6	Q0PNE2	266 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	PEX6	Q13608	980 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	STARD3	Q14849	445 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	TYSND1	Q2T9J0	566 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	ZRANB3	Q5FWF4	1079 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	AARS2	Q5JTZ9	985 aa	Known RBP	11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	ERN2	Q76MJ5	926 aa	Known RBP	11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	DCLK2	Q8N568	766 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	IL17RC	Q8NAC3	791 aa		11.74	□□□□□ -0.53
CLN6-223	ENST00000637823	OR2T3	Q8NH03	318 aa		11.74	□□□□□ -0.53

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