RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CDK9P50750 372 aaKnown RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ATXN1P54253 815 aaKnown RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 IRF9Q00978 393 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 LRRC32Q14392 662 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 POU6F1Q14863 301 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ACAP2Q15057 778 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 TMTC4Q5T4D3 741 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 CUZD1Q86UP6 607 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 FAM35AQ86V20 835 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 CNTN4Q8IWV2 1026 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 CLYBLQ8N0X4 340 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF786Q8N393 782 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 LINC01465Q8N7H1 131 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 OR6P1Q8NGX9 317 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 PNPT1Q8TCS8 783 aaKnown RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 USP33Q8TEY7 942 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 CLEC4CQ8WTT0 213 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ZUFSPQ96AP4 578 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 BIRC8Q96P09 236 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ZBTB18Q99592 522 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 PTPN18Q99952 460 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 TKTL2Q9H0I9 626 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 SYTL2Q9HCH5 934 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 CHST12Q9NRB3 414 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 TBCCD1Q9NVR7 557 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ZNF358Q9NW07 568 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 RIMS3Q9UJD0 308 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 AURKCQ9UQB9 309 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 AP3M1Q9Y2T2 418 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 TRIP12Q14669 1992 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 MAN2B1O00754 1011 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 MATN3O15232 486 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 DLX3O60479 287 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 CBFA2T3O75081 653 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 SUPT7LO94864 414 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 BMP10O95393 424 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 HNRNPCP07910 306 aaKnown RBP eCLIP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 UMPSP11172 480 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 CD1EP15812 388 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 NMBRP28336 390 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 RPL9P32969 192 aaKnown RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 SERPINH1P50454 418 aaKnown RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 TXNL4AP83876 142 aaKnown RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 HPCAP84074 193 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 EPS8Q12929 822 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 DUSP28Q4G0W2 176 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 VARS2Q5ST30 1063 aaKnown RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 MORN1Q5T089 497 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 C6orf52Q5T4I8 152 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 BROXQ5VW32 411 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 DDIASQ8IXT1 998 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 PLD6Q8N2A8 252 aaKnown RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 AADATQ8N5Z0 425 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 EFCAB3Q8N7B9 438 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 TSPEARQ8WU66 669 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 LPGAT1Q92604 370 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 OSMRQ99650 979 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 NPAS2Q99743 824 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 PKP2Q99959 881 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 SLC7A5P2Q9GIP4 190 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 SIK2Q9H0K1 926 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 RBM22Q9NW64 420 aaKnown RBP eCLIP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ZSCAN32Q9NX65 697 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 TBX21Q9UL17 535 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 GABRQQ9UN88 632 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 TRAF6Q9Y4K3 522 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ORC6Q9Y5N6 252 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 MYO16Q9Y6X6 1858 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 OBSL1O75147 1896 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 DHRS12A0PJE2 317 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 NR5A2O00482 541 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 SLC7A4O43246 635 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 GRID2O43424 1007 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 PMPCBO75439 489 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 SOAT2O75908 522 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 GFAPP14136 432 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 IDO1P14902 403 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 LBPP18428 481 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 CXCR3P49682 368 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ACLYP53396 1101 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 CRYBB1P53674 252 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 PRKCQQ04759 706 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 PEX6Q13608 980 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 CEACAM7Q14002 265 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 DLG2Q15700 870 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ZBTB6Q15916 424 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 RSPO4Q2I0M5 234 aaPredicted RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 COQ5Q5HYK3 327 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ATAT1Q5SQI0 421 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 WSCD1Q658N2 575 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 ABRAXAS1Q6UWZ7 409 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 NAPRTQ6XQN6 538 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 GK5Q6ZS86 529 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 MOB2Q70IA6 237 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 BEND5Q7L4P6 421 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 SPATA19Q7Z5L4 167 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 PATL1Q86TB9 770 aaKnown RBP3.98□□□□□ -1.77
SCN1A-214ENST00000637038 COLGALT2Q8IYK4 626 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 TBC1D21Q8IYX1 336 aa3.98□□□□□ -1.77
SCN1A-214ENST00000637038 PCDH20Q8N6Y1 951 aaKnown RBP3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms