RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 MDH1P40925 334 aaKnown RBP20.09■□□□□ 0.81
CLN3-250ENST00000636839 KIR2DL1P43626 348 aaPredicted RBP20.09■□□□□ 0.81
CLN3-250ENST00000636839 XIAPP98170 497 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 SLC18A2Q05940 514 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 RBM20Q5T481 1227 aaKnown RBP20.09■□□□□ 0.81
CLN3-250ENST00000636839 PSAPL1Q6NUJ1 521 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 TPRG1Q6ZUI0 275 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 PARS2Q7L3T8 475 aaKnown RBP20.09■□□□□ 0.81
CLN3-250ENST00000636839 MMAAQ8IVH4 418 aaKnown RBP20.09■□□□□ 0.81
CLN3-250ENST00000636839 SLC41A1Q8IVJ1 513 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 ARFGAP2Q8N6H7 521 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 ZNF513Q8N8E2 541 aaPredicted RBP20.09■□□□□ 0.81
CLN3-250ENST00000636839 MTBPQ96DY7 904 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 RHOJQ9H4E5 214 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 CATSPERZQ9NTU4 200 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 SENP1Q9P0U3 644 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 ITM2BQ9Y287 266 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 PKP3Q9Y446 797 aa20.09■□□□□ 0.81
CLN3-250ENST00000636839 FAM47DPA6NHR8 397 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 GAPDHSO14556 408 aaPredicted RBP20.08■□□□□ 0.8
CLN3-250ENST00000636839 CHRM1P11229 460 aaPredicted RBP20.08■□□□□ 0.8
CLN3-250ENST00000636839 IL9P15248 144 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 BPIP17213 487 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 CNTFP26441 200 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 CSE1LP55060 971 aaKnown RBP20.08■□□□□ 0.8
CLN3-250ENST00000636839 WDR4P57081 412 aaKnown RBP20.08■□□□□ 0.8
CLN3-250ENST00000636839 PDE1CQ14123 709 aaPredicted RBP20.08■□□□□ 0.8
CLN3-250ENST00000636839 ZNF460Q14592 562 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 PTCRAQ6ISU1 281 aaPredicted RBP20.08■□□□□ 0.8
CLN3-250ENST00000636839 BRAT1Q6PJG6 821 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 FAM151BQ6UXP7 276 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 TIFABQ6ZNK6 161 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 USP45Q70EL2 814 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 NDUFAF2Q8N183 169 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 PIP4K2CQ8TBX8 421 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 TCP10LQ8TDR4 215 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 NAT14Q8WUY8 206 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 ARRDC3Q96B67 414 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 LYSMD1Q96S90 227 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 CAPS2Q9BXY5 557 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 SNX15Q9NRS6 342 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 STARD13Q9Y3M8 1113 aa20.08■□□□□ 0.8
CLN3-250ENST00000636839 MTF2Q9Y483 593 aaPredicted RBP20.08■□□□□ 0.8
CLN3-250ENST00000636839 IL1BP01584 269 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 CD72P21854 359 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 FOXN2P32314 431 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 LEPRP48357 1165 aaKnown RBP20.07■□□□□ 0.8
CLN3-250ENST00000636839 ELAVL3Q14576 367 aaKnown RBP20.07■□□□□ 0.8
CLN3-250ENST00000636839 GPATCH11Q8N954 259 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 GDAP1Q8TB36 358 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 CALML6Q8TD86 181 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 DENND1AQ8TEH3 1009 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 OR8D1Q8WZ84 308 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 SPOCK2Q92563 424 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 CCDC97Q96F63 343 aaPredicted RBP20.07■□□□□ 0.8
CLN3-250ENST00000636839 IL26Q9NPH9 171 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 GRID1Q9ULK0 1009 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 SHISA7A6NL88 538 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 PRPF4O43172 522 aaKnown RBP eCLIP20.07■□□□□ 0.8
CLN3-250ENST00000636839 RRP9O43818 475 aaKnown RBP20.07■□□□□ 0.8
CLN3-250ENST00000636839 TYK2P29597 1187 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 CD151P48509 253 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 GNGT1P63211 74 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 ZRANB3Q5FWF4 1079 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 CEP97Q8IW35 865 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 GPR26Q8NDV2 337 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 ATXN2LQ8WWM7 1075 aaKnown RBP20.07■□□□□ 0.8
CLN3-250ENST00000636839 GPR22Q99680 433 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 CNOT10Q9H9A5 744 aaKnown RBP20.07■□□□□ 0.8
CLN3-250ENST00000636839 INTS9Q9NV88 658 aaKnown RBP20.07■□□□□ 0.8
CLN3-250ENST00000636839 NSMCE4AQ9NXX6 385 aa20.07■□□□□ 0.8
CLN3-250ENST00000636839 TSPAN11A1L157 253 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 UPK3BL1B0FP48 263 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 UPK3BL2E5RIL1 263 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 PHGDHO43175 533 aaKnown RBP20.06■□□□□ 0.8
CLN3-250ENST00000636839 DNAJC6O75061 913 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 C1SP09871 688 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 POLR2LP62875 67 aaKnown RBP20.06■□□□□ 0.8
CLN3-250ENST00000636839 IRF9Q00978 393 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 FASTKD1Q53R41 847 aaKnown RBP20.06■□□□□ 0.8
CLN3-250ENST00000636839 AFTPHQ6ULP2 937 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 PLCD3Q8N3E9 789 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 GPR150Q8NGU9 434 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 PAIP2Q9BPZ3 127 aaKnown RBP20.06■□□□□ 0.8
CLN3-250ENST00000636839 OSBPL1AQ9BXW6 950 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 RABEP2Q9H5N1 569 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 ZNF358Q9NW07 568 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 CD84Q9UIB8 345 aa20.06■□□□□ 0.8
CLN3-250ENST00000636839 FAM95CA0A1B0GW59 222 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 OR1I1O60431 355 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 PRNPP04156 253 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 HNRNPLP14866 589 aaKnown RBP eCLIP20.05■□□□□ 0.8
CLN3-250ENST00000636839 UGT1A6P19224 532 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 UGT1A1P22309 533 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 UGT1A4P22310 534 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 UGT1A3P35503 534 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 UGT1A5P35504 534 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 NEK3P51956 506 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 LEXMQ3ZCV2 418 aa20.05■□□□□ 0.8
CLN3-250ENST00000636839 KIAA1211LQ6NV74 962 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms