RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ITM2BQ9Y287 266 aa12.7□□□□□ -0.38
PNKP-217ENST00000625216 CSNK1G3Q9Y6M4 447 aa12.7□□□□□ -0.38
PNKP-217ENST00000625216 ASPMQ8IZT6 3477 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.69□□□□□ -0.38
PNKP-217ENST00000625216 A0A1W2PQ67 120 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 H3BM21 787 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 SCAMP1O15126 338 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 SIGLEC6O43699 453 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 SDC3O75056 442 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 SEC31AO94979 1220 aaKnown RBP12.69□□□□□ -0.38
PNKP-217ENST00000625216 PIGNO95427 931 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 CAPNS1P04632 268 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 NME1P15531 152 aaKnown RBP12.69□□□□□ -0.38
PNKP-217ENST00000625216 ACP1P24666 158 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 GARSP41250 739 aaKnown RBP12.69□□□□□ -0.38
PNKP-217ENST00000625216 DRG2P55039 364 aaKnown RBP12.69□□□□□ -0.38
PNKP-217ENST00000625216 AP1S1P61966 158 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 E2F1Q01094 437 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 DNAJC3Q13217 504 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 PDE1CQ14123 709 aaPredicted RBP12.69□□□□□ -0.38
PNKP-217ENST00000625216 FZD2Q14332 565 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 LBRQ14739 615 aaKnown RBP12.69□□□□□ -0.38
PNKP-217ENST00000625216 BRD3Q15059 726 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 AGERQ15109 404 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 CCDC157Q569K6 752 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 DHRS13Q6UX07 377 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 CAMK1DQ8IU85 385 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 CACTIN-AS1Q8N1I8 211 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 BBS5Q8N3I7 341 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 NSMCE1Q8WV22 266 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 BTN2A2Q8WVV5 523 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 CCDC86Q9H6F5 360 aaKnown RBP12.69□□□□□ -0.38
PNKP-217ENST00000625216 FAM114A2Q9NRY5 505 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 ZDHHC18Q9NUE0 388 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 EVA1BQ9NVM1 165 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 DNAJC28Q9NX36 388 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 NLGN3Q9NZ94 848 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 DKK4Q9UBT3 224 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 GGT7Q9UJ14 662 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 SPEGQ15772 3267 aa12.69□□□□□ -0.38
PNKP-217ENST00000625216 IGF2RP11717 2491 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 COL5A1P20908 1838 aaPredicted RBP12.68□□□□□ -0.38
PNKP-217ENST00000625216 CCDC151A5D8V7 595 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 TRIM38O00635 465 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 DNALI1O14645 258 aaPredicted RBP12.68□□□□□ -0.38
PNKP-217ENST00000625216 TP73O15350 636 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 KRT37O76014 449 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 TUBBP07437 444 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 JUPP14923 745 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 MX2P20592 715 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 MCM3P25205 808 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 HNF1BP35680 557 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 RGRP47804 291 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 DUSP3P51452 185 aaPredicted RBP12.68□□□□□ -0.38
PNKP-217ENST00000625216 THOP1P52888 689 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 AP1B1Q10567 949 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 WASHC5Q12768 1159 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 GPS1Q13098 491 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 CUL1Q13616 776 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 LRRC14Q15048 493 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 RALGPS1Q5JS13 557 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 IZUMO3Q5VZ72 239 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 ATPAF2Q8N5M1 289 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 PDCD7Q8N8D1 485 aaKnown RBP12.68□□□□□ -0.38
PNKP-217ENST00000625216 CCDC89Q8N998 374 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 FAM181AQ8N9Y4 354 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 CCNYQ8ND76 341 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 CCDC110Q8TBZ0 833 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 AENQ8WTP8 325 aaKnown RBP12.68□□□□□ -0.38
PNKP-217ENST00000625216 HTR3CQ8WXA8 447 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 IFT81Q8WYA0 676 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 SPOCK2Q92563 424 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 ECHDC3Q96DC8 303 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 SNF8Q96H20 258 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 TBATAQ96M53 351 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 PCDH12Q9NPG4 1184 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 UCKL1Q9NWZ5 548 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 NCKIPSDQ9NZQ3 722 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 WHRNQ9P202 907 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 NFU1Q9UMS0 254 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 ATP8A1Q9Y2Q0 1164 aa12.68□□□□□ -0.38
PNKP-217ENST00000625216 AKAP13Q12802 2813 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 MYLKQ15746 1914 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 C5orf60A6NFR6 353 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 TRAFD1O14545 582 aaPredicted RBP12.67□□□□□ -0.38
PNKP-217ENST00000625216 TPP1O14773 563 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 MAFKO60675 156 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 FAM153BP0C7A2 387 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 GIMD1P0DJR0 217 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 CKMT1AP12532 417 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 JUNDP17535 347 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 ITIH2P19823 946 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 NFKBIAP25963 317 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 PTPN3P26045 913 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 STIP1P31948 543 aaKnown RBP12.67□□□□□ -0.38
PNKP-217ENST00000625216 IGFALSP35858 605 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 SCNN1BP51168 640 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 ITGA8P53708 1063 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 DAB2P98082 770 aa12.67□□□□□ -0.38
PNKP-217ENST00000625216 SLC10A7Q0GE19 358 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms