RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 DEFB123Q8N688 67 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 TMIEQ8NEW7 156 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 DENND1AQ8TEH3 1009 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 DNASE1L2Q92874 299 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 PRSS16Q9NQE7 514 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 FBXO6Q9NRD1 293 aaPredicted RBP14.26□□□□□ -0.13
USP39-220ENST00000613444 B4GALT6Q9UBX8 382 aa14.26□□□□□ -0.13
USP39-220ENST00000613444 A8MX80 341 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 TPP1O14773 563 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 MDH1P40925 334 aaKnown RBP14.25□□□□□ -0.13
USP39-220ENST00000613444 HADHAP40939 763 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 TYSND1Q2T9J0 566 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 LRRC66Q68CR7 880 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 CNSTQ6PJW8 725 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 AFTPHQ6ULP2 937 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 NUDT18Q6ZVK8 323 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 RALGPS2Q86X27 583 aaPredicted RBP14.25□□□□□ -0.13
USP39-220ENST00000613444 CNPY4Q8N129 248 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 PAF1Q8N7H5 531 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 OR8D1Q8WZ84 308 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 ALKBH8Q96BT7 664 aaKnown RBP14.25□□□□□ -0.13
USP39-220ENST00000613444 KCNK9Q9NPC2 374 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 CATSPERZQ9NTU4 200 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 STON1Q9Y6Q2 735 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 PIAS3Q9Y6X2 628 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 PLXNA2O75051 1894 aa14.25□□□□□ -0.13
USP39-220ENST00000613444 FAM47DPA6NHR8 397 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 C16orf96A6NNT2 1141 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 UPK3BL1B0FP48 263 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 UPK3BL2E5RIL1 263 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 NARSO43776 548 aaKnown RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 RRP9O43818 475 aaKnown RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 PRNPP04156 253 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 OGNP20774 298 aaKnown RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 RPA3P35244 121 aaPredicted RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 CDKN1CP49918 316 aaPredicted RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 POM121L1PQ3SYA9 428 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 TMEM196Q5HYL7 178 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 PARS2Q7L3T8 475 aaKnown RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 PIANPQ8IYJ0 282 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 NDUFAF2Q8N183 169 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 ATXN2LQ8WWM7 1075 aaKnown RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 PCDH12Q9NPG4 1184 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 MKS1Q9NXB0 559 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 SMG5Q9UPR3 1016 aaKnown RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 PKP3Q9Y446 797 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 EPHX1P07099 455 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 BPIP17213 487 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 MC4RP32245 332 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 CD151P48509 253 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 NEK3P51956 506 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 STC1P52823 247 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 PDE1CQ14123 709 aaPredicted RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 TTC19Q6DKK2 380 aaPredicted RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 CDHR3Q6ZTQ4 885 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 CMC1Q7Z7K0 106 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 CBARPQ8N350 705 aaPredicted RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 ZNF513Q8N8E2 541 aaPredicted RBP14.24□□□□□ -0.13
USP39-220ENST00000613444 PIP4K2CQ8TBX8 421 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 ACMSDQ8TDX5 336 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 ARRDC3Q96B67 414 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 APOPT1Q96IL0 206 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 CAB39LQ9H9S4 337 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 SNX15Q9NRS6 342 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 SUN2Q9UH99 717 aa14.24□□□□□ -0.13
USP39-220ENST00000613444 NPC1O15118 1278 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 SPINT1O43278 529 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 SHOX2O60902 331 aaPredicted RBP14.23□□□□□ -0.13
USP39-220ENST00000613444 EGFP01133 1207 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 C1SP09871 688 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 ITGB7P26010 798 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 WDR4P57081 412 aaKnown RBP14.23□□□□□ -0.13
USP39-220ENST00000613444 RALGDSQ12967 914 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 PON2Q15165 354 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 PTCRAQ6ISU1 281 aaPredicted RBP14.23□□□□□ -0.13
USP39-220ENST00000613444 MRNIPQ6NTE8 343 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 PSAPL1Q6NUJ1 521 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 GABPB2Q8TAK5 448 aaPredicted RBP14.23□□□□□ -0.13
USP39-220ENST00000613444 C12orf65Q9H3J6 166 aaKnown RBP14.23□□□□□ -0.13
USP39-220ENST00000613444 C8orf33Q9H7E9 229 aaPredicted RBP14.23□□□□□ -0.13
USP39-220ENST00000613444 IL26Q9NPH9 171 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 PIKFYVEQ9Y2I7 2098 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 KPNA3O00505 521 aaPredicted RBP14.23□□□□□ -0.13
USP39-220ENST00000613444 GPR39O43194 453 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 TOP3BO95985 862 aaKnown RBP14.23□□□□□ -0.13
USP39-220ENST00000613444 CA5AP35218 305 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 GMPRP36959 345 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 SERPINB8P50452 374 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 SEC13P55735 322 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 CAMK2GQ13555 558 aaPredicted RBP14.23□□□□□ -0.13
USP39-220ENST00000613444 C2orf27AQ580R0 203 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 PPM1JQ5JR12 505 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 RBM20Q5T481 1227 aaKnown RBP14.23□□□□□ -0.13
USP39-220ENST00000613444 RFLNAQ6ZTI6 216 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 TTC7BQ86TV6 843 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 CHPFQ8IZ52 775 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 ANKRD42Q8N9B4 389 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 TCP10LQ8TDR4 215 aa14.23□□□□□ -0.13
USP39-220ENST00000613444 SCG3Q8WXD2 468 aaKnown RBP14.23□□□□□ -0.13
USP39-220ENST00000613444 CENPTQ96BT3 561 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms