RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 TM6SF2Q9BZW4 377 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 DNAJC28Q9NX36 388 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 SYBUQ9NX95 663 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 ELOVL2Q9NXB9 296 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 SLCO3A1Q9UIG8 710 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 ERVW-1Q9UQF0 538 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 TPP1O14773 563 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 ATP9BO43861 1147 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 ZNF821O75541 412 aaPredicted RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 NDST3O95803 873 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 PROCP04070 461 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 SRPRAP08240 638 aaKnown RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 FGF3P11487 239 aaPredicted RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 ACADSP16219 412 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 CHRNA4P43681 627 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 CLNS1AP54105 237 aaKnown RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 PRKAA2P54646 552 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 PDE1BQ01064 536 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 ZRSR2Q15696 482 aaKnown RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 TSNAXIP1Q2TAA8 658 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 TRMT5Q32P41 509 aaKnown RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 HSF5Q4G112 596 aaPredicted RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 PCID2Q5JVF3 399 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 ATXN7L2Q5T6C5 722 aaPredicted RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 N4BP2L1Q5TBK1 243 aaPredicted RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 C22orf39Q6P5X5 142 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 APLFQ8IW19 511 aaPredicted RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 PLPP6Q8IY26 295 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 PLCD3Q8N3E9 789 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 SLC25A41Q8N5S1 370 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 DEFB123Q8N688 67 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.72□□□□□ -0.53
VRK3-223ENST00000601341 OR2AP1Q8NGE2 309 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 PPP1R14CQ8TAE6 165 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 TTC8Q8TAM2 541 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 PTCD2Q8WV60 388 aaKnown RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 NXPE3Q969Y0 559 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 NAF1Q96HR8 494 aaKnown RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 ZNF570Q96NI8 536 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 RBBP8Q99708 897 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 PHF7Q9BWX1 381 aaPredicted RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 TDRD1Q9BXT4 1180 aaKnown RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 STX18Q9P2W9 335 aaKnown RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 COPG2Q9UBF2 871 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 NKX1-2Q9UD57 310 aaPredicted RBP11.72□□□□□ -0.53
VRK3-223ENST00000601341 EMCNQ9ULC0 261 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 PLA2G4CQ9UP65 541 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 RAI2Q9Y5P3 530 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 RPS6KL1Q9Y6S9 549 aa11.72□□□□□ -0.53
VRK3-223ENST00000601341 MYOFQ9NZM1 2061 aa11.71□□□□□ -0.53
VRK3-223ENST00000601341 C2CD4DB7Z1M9 353 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 SPECC1L-ADORA2AF8WAN1 911 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 ARNTLO00327 626 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 FGF1P05230 155 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 ATXN1LP0C7T5 689 aaKnown RBP11.71□□□□□ -0.54
VRK3-223ENST00000601341 ATP6V1C1P21283 382 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 OPRD1P41143 372 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 RECQLP46063 649 aaPredicted RBP11.71□□□□□ -0.54
VRK3-223ENST00000601341 SLC1A6P48664 564 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 AQP5P55064 265 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 ST8SIA6P61647 398 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 PCLAFQ15004 111 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 SIRPB2Q5JXA9 342 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 TEDDM1Q5T9Z0 273 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 C6orf163Q5TEZ5 329 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 METTL21CQ5VZV1 264 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 NUDT18Q6ZVK8 323 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 NET1Q7Z628 596 aaPredicted RBP11.71□□□□□ -0.54
VRK3-223ENST00000601341 RASSF3Q86WH2 238 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 TERB1Q8NA31 727 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 RDH11Q8TC12 318 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 CSGALNACT1Q8TDX6 532 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 MRGPRX3Q96LB0 322 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 GUCD1Q96NT3 240 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 TRIB3Q96RU7 358 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 MCMBPQ9BTE3 642 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 ADGRE3Q9BY15 652 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 TNKS2Q9H2K2 1166 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 EVLQ9UI08 416 aaPredicted RBP11.71□□□□□ -0.54
VRK3-223ENST00000601341 PCDHGC4Q9Y5F7 938 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 DENND4AQ7Z401 1863 aa11.71□□□□□ -0.54
VRK3-223ENST00000601341 TBC1D3BA6NDS4 549 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 TMEM114B3SHH9 223 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 PRRT4C9JH25 899 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 TM7SF2O76062 418 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 SNUPNO95149 360 aaKnown RBP11.7□□□□□ -0.54
VRK3-223ENST00000601341 TYK2P29597 1187 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 PGM1P36871 562 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 VHLP40337 213 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 PTDSS1P48651 473 aaKnown RBP11.7□□□□□ -0.54
VRK3-223ENST00000601341 KDSRQ06136 332 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 RAD51Q06609 339 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 BCL2L1Q07817 233 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 POU6F1Q14863 301 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 MYLK3Q32MK0 819 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 CARD16Q5EG05 197 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 CES4AQ5XG92 561 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 RINLQ6ZS11 566 aa11.7□□□□□ -0.54
VRK3-223ENST00000601341 RYBPQ8N488 228 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms